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The map label for this gene is oppC [H]

Identifier: 148651840

GI number: 148651840

Start: 33858

End: 34763

Strand: Direct

Name: oppC [H]

Synonym: PsycPRwf_0023

Alternate gene names: 148651840

Gene position: 33858-34763 (Clockwise)

Preceding gene: 148651839

Following gene: 148651841

Centisome position: 1.14

GC content: 45.7

Gene sequence:

>906_bases
ATGAGTGTTATCACTGACAAGCCCATTGATTTAGTAGCGCCCACCGCACCTGCCATTAAAGGACGCAGCTTATGGCAGGA
TGCTTGGCGTCGTTTTTATAAAAACAAAGCGGCGATTGCCAGCTTGGTTATCTTATTTTTGGTCACAGTATTTGTGATTT
TTGTGCCGATGTTTGCACCTTTTGGTTATGCAGAGACCGATTGGGGCTATATGCAAGGGGCGCCATCATTAGAGAATAAG
CATTATTTTGGCACCGACTCTTTGGGCCGTGATTTATTGGTACGTACCGCCATTGGTGGTCGTATCTCGCTACTTGTAGG
TATTGCAGGCGCCACTGTGGCGGTGATATTCGGTACCGTTTATGGTGCAGCATCTGGCTACTTAGGCGGTAAGATTGATG
CGATTATGATGCGCTTTTTGGAAATCCTAAACGCCTTTCCATTTATGTTCTTCGTGATTTTGTTGGTGACTATCTTTGGT
CGTAACCTGATGCTTATTTTCGTGGCCATTGGTCTGGTTTCTTGGCTGGATGTGGCGCGTATTGTACGTGGTCAAACACT
AAGTCTTAAGAGCAAAGAATTTATTGAAGCGGCGCATGTGGGCGGGGTATCAGGCTTTAATATTATTATGCGTCACATCG
TGCCAAACGTACTTGGCGTGGTGGTGGTGTATGCCTCACTACTGGTGCCTAGCATGATTTTATTTGAGTCTTTCTTAAGC
TTCTTAGGCTTAGGTGTACAAGAGCCGATGACCAGTTGGGGTGCTTTATTACAAGAGGGCTCGCAGACGATGCAGGTGGC
ACCATGGCAGATTTTGATACCTTCTGTGTTTTTGGTAGTGACTTTGTTTTGTTTTAACTTTATCGGGGATGGTTTGCGTG
ATGCGTTTGACCCCAAAGATCGCTAG

Upstream 100 bases:

>100_bases
AGGCCGTTAAGTAGGCTCGCCAAAGCATCAATGAAATGCCCATTGCCCTAACGCCTACTTACCCCATTCACCTGCAAAAG
ATTAAGTAACAAGGATGACT

Downstream 100 bases:

>100_bases
TTAATGGTTTGAGTTAACCAATTCAATCCATAACGTGCATACATAAGTGAGTTAAAACCACAAAAAATACAGTGGGTAAT
GCCCGCCAATAGCCAAATAG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSVITDKPIDLVAPTAPAIKGRSLWQDAWRRFYKNKAAIASLVILFLVTVFVIFVPMFAPFGYAETDWGYMQGAPSLENK
HYFGTDSLGRDLLVRTAIGGRISLLVGIAGATVAVIFGTVYGAASGYLGGKIDAIMMRFLEILNAFPFMFFVILLVTIFG
RNLMLIFVAIGLVSWLDVARIVRGQTLSLKSKEFIEAAHVGGVSGFNIIMRHIVPNVLGVVVVYASLLVPSMILFESFLS
FLGLGVQEPMTSWGALLQEGSQTMQVAPWQILIPSVFLVVTLFCFNFIGDGLRDAFDPKDR

Sequences:

>Translated_301_residues
MSVITDKPIDLVAPTAPAIKGRSLWQDAWRRFYKNKAAIASLVILFLVTVFVIFVPMFAPFGYAETDWGYMQGAPSLENK
HYFGTDSLGRDLLVRTAIGGRISLLVGIAGATVAVIFGTVYGAASGYLGGKIDAIMMRFLEILNAFPFMFFVILLVTIFG
RNLMLIFVAIGLVSWLDVARIVRGQTLSLKSKEFIEAAHVGGVSGFNIIMRHIVPNVLGVVVVYASLLVPSMILFESFLS
FLGLGVQEPMTSWGALLQEGSQTMQVAPWQILIPSVFLVVTLFCFNFIGDGLRDAFDPKDR
>Mature_300_residues
SVITDKPIDLVAPTAPAIKGRSLWQDAWRRFYKNKAAIASLVILFLVTVFVIFVPMFAPFGYAETDWGYMQGAPSLENKH
YFGTDSLGRDLLVRTAIGGRISLLVGIAGATVAVIFGTVYGAASGYLGGKIDAIMMRFLEILNAFPFMFFVILLVTIFGR
NLMLIFVAIGLVSWLDVARIVRGQTLSLKSKEFIEAAHVGGVSGFNIIMRHIVPNVLGVVVVYASLLVPSMILFESFLSF
LGLGVQEPMTSWGALLQEGSQTMQVAPWQILIPSVFLVVTLFCFNFIGDGLRDAFDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=283, Percent_Identity=73.8515901060071, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1787054, Length=280, Percent_Identity=37.5, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=34.8659003831418, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789964, Length=278, Percent_Identity=34.8920863309352, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1789889, Length=224, Percent_Identity=32.5892857142857, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1788505, Length=247, Percent_Identity=31.5789473684211, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787549, Length=274, Percent_Identity=30.2919708029197, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33002; Mature: 32870

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVITDKPIDLVAPTAPAIKGRSLWQDAWRRFYKNKAAIASLVILFLVTVFVIFVPMFAP
CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGYAETDWGYMQGAPSLENKHYFGTDSLGRDLLVRTAIGGRISLLVGIAGATVAVIFGTV
CCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YGAASGYLGGKIDAIMMRFLEILNAFPFMFFVILLVTIFGRNLMLIFVAIGLVSWLDVAR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IVRGQTLSLKSKEFIEAAHVGGVSGFNIIMRHIVPNVLGVVVVYASLLVPSMILFESFLS
HHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGLGVQEPMTSWGALLQEGSQTMQVAPWQILIPSVFLVVTLFCFNFIGDGLRDAFDPKD
HHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
R
C
>Mature Secondary Structure 
SVITDKPIDLVAPTAPAIKGRSLWQDAWRRFYKNKAAIASLVILFLVTVFVIFVPMFAP
CCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]