Click here to switch to the map view.

The map label for this gene is 148550828

Identifier: 148550828

GI number: 148550828

Start: 300518

End: 300841

Strand: Direct

Name: 148550828

Synonym: Swit_5392

Alternate gene names: NA

Gene position: 300518-300841 (Clockwise)

Preceding gene: 148550822

Following gene: 148550829

Centisome position: 96.87

GC content: 66.98

Gene sequence:

>324_bases
ATGATCACTTCGCAACAGATGCGTGCGGCTCGCGCCCTTCTCGGGATTGACCAGCGCCAACTCGCCCAGCTCGCGCAGCT
TTCGCTGCCGACCATCCAGCGCATGGAAGCCTCGGAGGGGCAAGTTCGCGGCGTGGTCGACACCTTGGTAAAAGTGATCG
GCGCGCTTGAAAGCGCTGGCATTGAACTGCTCGGCGAGAACGCGCCGAGCAGCGGGGTGGGACGCGGCGTGCGCCTGCGC
GAGACGAAGTCCGGTCGCTCCGCCGGCACCGTGCCATCGCTGTTGTACGACCAGGAAGAGGCCGGCGCGACGCCGCCGCA
GTGA

Upstream 100 bases:

>100_bases
GCCAATGGTCGATCCTTGAGAGTCGGTTTCTCAAGCCTTATCACACATGACCTGTGATTGATAAGATTGCAATTTAATGT
TTCATACGTCATGAGGGTGC

Downstream 100 bases:

>100_bases
CCCAAGGGATGATGATGAGCAGTTCGGACGATTATGTGTATGACGAAGCATCCGGCGAATGGATCAGCCCGCAGGATGCG
AAGGCCCGCGCGGTAGACCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain Protein

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MITSQQMRAARALLGIDQRQLAQLAQLSLPTIQRMEASEGQVRGVVDTLVKVIGALESAGIELLGENAPSSGVGRGVRLR
ETKSGRSAGTVPSLLYDQEEAGATPPQ

Sequences:

>Translated_107_residues
MITSQQMRAARALLGIDQRQLAQLAQLSLPTIQRMEASEGQVRGVVDTLVKVIGALESAGIELLGENAPSSGVGRGVRLR
ETKSGRSAGTVPSLLYDQEEAGATPPQ
>Mature_107_residues
MITSQQMRAARALLGIDQRQLAQLAQLSLPTIQRMEASEGQVRGVVDTLVKVIGALESAGIELLGENAPSSGVGRGVRLR
ETKSGRSAGTVPSLLYDQEEAGATPPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11254; Mature: 11254

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSQQMRAARALLGIDQRQLAQLAQLSLPTIQRMEASEGQVRGVVDTLVKVIGALESAG
CCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
IELLGENAPSSGVGRGVRLRETKSGRSAGTVPSLLYDQEEAGATPPQ
HHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCHHCCCCCCC
>Mature Secondary Structure
MITSQQMRAARALLGIDQRQLAQLAQLSLPTIQRMEASEGQVRGVVDTLVKVIGALESAG
CCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
IELLGENAPSSGVGRGVRLRETKSGRSAGTVPSLLYDQEEAGATPPQ
HHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA