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The map label for this gene is traC [H]

Identifier: 148550807

GI number: 148550807

Start: 277418

End: 280012

Strand: Direct

Name: traC [H]

Synonym: Swit_5371

Alternate gene names: 148550807

Gene position: 277418-280012 (Clockwise)

Preceding gene: 148550806

Following gene: 148550808

Centisome position: 89.42

GC content: 63.58

Gene sequence:

>2595_bases
ATGGCGAAAGGCGGCTTTTTCGACAGCATGCTTTCGGGGCTCTTCGGCGATGCCGCGCGCCCTGATGATGACCGGCCCGC
GCTTGGCGTTCCCATGCTGGCGCACTGGCTGCCCTATCGCAGCTACGATCCCAAGACGGGGATCTTCTACAACAGCGCCT
CGCGCGGATTCGTGATCGAGGCCGCTCCGATGGTGGGCGCGGACGAGCGCACCGCGGAGATCATCACGCAGTTCCTGTCC
GAAGGCATTCCCGCGCCGGGCTGCATCCAGTTCCATCAGTGGATGAGCCCGCGCGTGGGGGAGGCGCTGAGCAAATGGTA
TCTGCCGCGCTATGCCGCACGCGGCGTCTACGAACGGATGGCCAAGCACCGGGTCGATTTCCTCAGCGACGGCGTATGGC
AGTCGCTCTCGAAGGACGCGCCCTTTTGCCTGCGCCATCACCGCGTGGCGATCTCCTATTCGACGCCCGAGAGCTCGTCG
GTGTCCGATGACGACATCGTCTCGGTCATGGAGGGGCTCGTCTCCGCGCTGGCTTCGGTGGGGATCACGACCCGGCGCAT
GGATCCGGTCGCGCTGATCGCCTGGATCGACGACATCACTTCACCGACCACGGCTGCCGGTGAGGACGTCGTCAGCTACA
ATCCCTTCGATCCAATCGCCGACCAGGCCATTCGCCGCGACATCGAGCTCCGGGTCGAACCCGACCGGATGCTGCTGCGC
ACCGAGCGGTTCCGACCGACCGGCAAGGTCCACGAAGGCGCCCCGGAGATCGGCGAGATCTATCCCGATGTCTTTGACGT
GCGCTCCTTCTCGGTGCGCAACCTGCCCAATCGCTGGGCGCCCTGGGACATGGCGAAGCTGGTGGGCGACATGTTCACTG
ACAAGCTGCGCATGCCGTGCCCGGTCGCGACGAACCTGTGCGTTGAATATCCGGACACCCAGGCCTCGTCGAACAAGGCG
AGCTTCAAGTTCATGCGGACGACGAGTCTCGCCGATTCCAAGTCCGCGCGTTTCCTGCCGCAGCTGCGCGACCAGAGCCA
GGAGTGGCGGTTCGTCAACGACGAGATCCGGCAGGGCCGCAAACTTGTGCGGGTATTCTTTTCCGTCACCTCCTTCTCGC
CCAAGGGACGCGGCGACGCCAACGAACGTGTGCTCAAATCCGTCTACCGCGCGGCGGGCTGGGACCTGCTCGACGACCGC
TACCTGCAGGTGATGGGCCTGCTCTGCGCCATGCCCATGACGATGGCCAACGGCCTGTCGCGCGATCTCGAGCGGATGAA
GCGCATGCGCACGCTGCTCACCACCACCGCCGCCAATCTCGCGCCGCTGCAGGGCGAATATCTAGGCGGCCATGTGCCGC
ATCTCCTGATGGTGGGACGGCGCGGCCAGCCCTTCTTCTGGTCACCCTTCGAAAACGCGGCGGGCAACCATAATGTCGCG
GTCTTCGGCAAATCGGGATCGGGCAAGTCGGTGGCCTTGCAGGAGCTGTGCGCCTCGCTGTGCGGCGCTGGCGCAAAGGT
GGTCGTGATCGACGACGGGCGATCGTTCGAGCATTCGGCCAAATTGCAGGGCGGCGCCTTCGTCGAATTCACCATGAGCT
CGGGCTTCTGCCTTAATCCCTTCTCGATGATCGACGAGGCCCAGGCGGCTGAGGACGAGGACTATCTGCTCGACTGCATG
GCGATGCTCAAGGCCATCGTGAACCAGATGTCGCGCCACATCGACCGTCTCAACGATACCGAGCGCGGCCTCATCGATGG
CGCGGTCAACACGGTGTGGGAGGCACACGGCCGAAGAGGATCGATCGACCTTGTGATCGAGGCGCTCGATGCAACCGGCA
ACGCGCTCGCGCACGACCTCGGTATTGCGATGCGCCCCTTCTCGGCGGCGGGCACCTATGGCCGGTTCTTCCAGGGGGAG
GTCAGCTTCGAACTGAAGGCGCAGCTCACGGTCTTCGAGCTCTCGGATCTCTCCGCGCGCGAAGAACTGCGCAGCGTGGT
CCTCACCGCCATCATGTTCATGTCGCAGCAGGTGATGCGCAAGGTCGATCGCGCAATCCCCAAGGCACTGCTGCTGGATG
AAGCCTGGCAGCTGCTGCGCGGCGGGGCTATGGCCGACTTCATCGAGACCTATGCGCGCACCTGCCGCAAATATGGCGCT
TCGCTCGTCACCGCCACGCAGTCGCTCAACGATTATTACAAGTCGGCGGGTTCGATCGCGGCGCTGGAGAACAGCGACTG
GTTCGTCATCCTGCAGCAGAAGCCGGAAACGATCGCCGACTTCAAGAAGCATGATCGCTTCGAGATGGACGATTATACCG
ATGCGCTGCTGCGCTCCTTGAAGCGTAACGGCTTCGAATATTCGGACATCATGATCAAGGGACCCGAGACGCTGGCGGTT
GGTCGCCTGGTTCTGGATCCCTATTCAGCCACATTGTTTTCCTCGAGCCCGCAGACCTTCGCCCGGATCGAGGCGCTGAT
CGGAGAGGGTCTCAGCATGGACGAGGCGATCGAGCGCATCGCCTTTCCCGACAACCCCGAGAAATGGGCGGCGAACGCGG
AGAGTGATCCCGACGTCGCAATCGCCGCGGAGTAG

Upstream 100 bases:

>100_bases
GCAGCGGCCACGGGCGCGCAGGCGCCCGATCTGCGGCCGGTGCTCAAGCCCACGGTGAGTTCGGCCCCATTCCCCGGCGC
TGTCGCGGAGGAGAACTGAC

Downstream 100 bases:

>100_bases
GTACGGTGGCAACGATCGCGAGCGAAGAGACCCTTAAGCCCAGCTCATCAGCGGCGGCTAACCCGCGCATCCGGCTCGAC
CTGCGCACGATCCTCTATTG

Product: Type-IV secretion system protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 864; Mature: 863

Protein sequence:

>864_residues
MAKGGFFDSMLSGLFGDAARPDDDRPALGVPMLAHWLPYRSYDPKTGIFYNSASRGFVIEAAPMVGADERTAEIITQFLS
EGIPAPGCIQFHQWMSPRVGEALSKWYLPRYAARGVYERMAKHRVDFLSDGVWQSLSKDAPFCLRHHRVAISYSTPESSS
VSDDDIVSVMEGLVSALASVGITTRRMDPVALIAWIDDITSPTTAAGEDVVSYNPFDPIADQAIRRDIELRVEPDRMLLR
TERFRPTGKVHEGAPEIGEIYPDVFDVRSFSVRNLPNRWAPWDMAKLVGDMFTDKLRMPCPVATNLCVEYPDTQASSNKA
SFKFMRTTSLADSKSARFLPQLRDQSQEWRFVNDEIRQGRKLVRVFFSVTSFSPKGRGDANERVLKSVYRAAGWDLLDDR
YLQVMGLLCAMPMTMANGLSRDLERMKRMRTLLTTTAANLAPLQGEYLGGHVPHLLMVGRRGQPFFWSPFENAAGNHNVA
VFGKSGSGKSVALQELCASLCGAGAKVVVIDDGRSFEHSAKLQGGAFVEFTMSSGFCLNPFSMIDEAQAAEDEDYLLDCM
AMLKAIVNQMSRHIDRLNDTERGLIDGAVNTVWEAHGRRGSIDLVIEALDATGNALAHDLGIAMRPFSAAGTYGRFFQGE
VSFELKAQLTVFELSDLSAREELRSVVLTAIMFMSQQVMRKVDRAIPKALLLDEAWQLLRGGAMADFIETYARTCRKYGA
SLVTATQSLNDYYKSAGSIAALENSDWFVILQQKPETIADFKKHDRFEMDDYTDALLRSLKRNGFEYSDIMIKGPETLAV
GRLVLDPYSATLFSSSPQTFARIEALIGEGLSMDEAIERIAFPDNPEKWAANAESDPDVAIAAE

Sequences:

>Translated_864_residues
MAKGGFFDSMLSGLFGDAARPDDDRPALGVPMLAHWLPYRSYDPKTGIFYNSASRGFVIEAAPMVGADERTAEIITQFLS
EGIPAPGCIQFHQWMSPRVGEALSKWYLPRYAARGVYERMAKHRVDFLSDGVWQSLSKDAPFCLRHHRVAISYSTPESSS
VSDDDIVSVMEGLVSALASVGITTRRMDPVALIAWIDDITSPTTAAGEDVVSYNPFDPIADQAIRRDIELRVEPDRMLLR
TERFRPTGKVHEGAPEIGEIYPDVFDVRSFSVRNLPNRWAPWDMAKLVGDMFTDKLRMPCPVATNLCVEYPDTQASSNKA
SFKFMRTTSLADSKSARFLPQLRDQSQEWRFVNDEIRQGRKLVRVFFSVTSFSPKGRGDANERVLKSVYRAAGWDLLDDR
YLQVMGLLCAMPMTMANGLSRDLERMKRMRTLLTTTAANLAPLQGEYLGGHVPHLLMVGRRGQPFFWSPFENAAGNHNVA
VFGKSGSGKSVALQELCASLCGAGAKVVVIDDGRSFEHSAKLQGGAFVEFTMSSGFCLNPFSMIDEAQAAEDEDYLLDCM
AMLKAIVNQMSRHIDRLNDTERGLIDGAVNTVWEAHGRRGSIDLVIEALDATGNALAHDLGIAMRPFSAAGTYGRFFQGE
VSFELKAQLTVFELSDLSAREELRSVVLTAIMFMSQQVMRKVDRAIPKALLLDEAWQLLRGGAMADFIETYARTCRKYGA
SLVTATQSLNDYYKSAGSIAALENSDWFVILQQKPETIADFKKHDRFEMDDYTDALLRSLKRNGFEYSDIMIKGPETLAV
GRLVLDPYSATLFSSSPQTFARIEALIGEGLSMDEAIERIAFPDNPEKWAANAESDPDVAIAAE
>Mature_863_residues
AKGGFFDSMLSGLFGDAARPDDDRPALGVPMLAHWLPYRSYDPKTGIFYNSASRGFVIEAAPMVGADERTAEIITQFLSE
GIPAPGCIQFHQWMSPRVGEALSKWYLPRYAARGVYERMAKHRVDFLSDGVWQSLSKDAPFCLRHHRVAISYSTPESSSV
SDDDIVSVMEGLVSALASVGITTRRMDPVALIAWIDDITSPTTAAGEDVVSYNPFDPIADQAIRRDIELRVEPDRMLLRT
ERFRPTGKVHEGAPEIGEIYPDVFDVRSFSVRNLPNRWAPWDMAKLVGDMFTDKLRMPCPVATNLCVEYPDTQASSNKAS
FKFMRTTSLADSKSARFLPQLRDQSQEWRFVNDEIRQGRKLVRVFFSVTSFSPKGRGDANERVLKSVYRAAGWDLLDDRY
LQVMGLLCAMPMTMANGLSRDLERMKRMRTLLTTTAANLAPLQGEYLGGHVPHLLMVGRRGQPFFWSPFENAAGNHNVAV
FGKSGSGKSVALQELCASLCGAGAKVVVIDDGRSFEHSAKLQGGAFVEFTMSSGFCLNPFSMIDEAQAAEDEDYLLDCMA
MLKAIVNQMSRHIDRLNDTERGLIDGAVNTVWEAHGRRGSIDLVIEALDATGNALAHDLGIAMRPFSAAGTYGRFFQGEV
SFELKAQLTVFELSDLSAREELRSVVLTAIMFMSQQVMRKVDRAIPKALLLDEAWQLLRGGAMADFIETYARTCRKYGAS
LVTATQSLNDYYKSAGSIAALENSDWFVILQQKPETIADFKKHDRFEMDDYTDALLRSLKRNGFEYSDIMIKGPETLAVG
RLVLDPYSATLFSSSPQTFARIEALIGEGLSMDEAIERIAFPDNPEKWAANAESDPDVAIAAE

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 95915; Mature: 95784

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGGFFDSMLSGLFGDAARPDDDRPALGVPMLAHWLPYRSYDPKTGIFYNSASRGFVIE
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCEEEE
AAPMVGADERTAEIITQFLSEGIPAPGCIQFHQWMSPRVGEALSKWYLPRYAARGVYERM
ECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AKHRVDFLSDGVWQSLSKDAPFCLRHHRVAISYSTPESSSVSDDDIVSVMEGLVSALASV
HHHHHHHHHHHHHHHHCCCCCHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
GITTRRMDPVALIAWIDDITSPTTAAGEDVVSYNPFDPIADQAIRRDIELRVEPDRMLLR
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCHHHHHH
TERFRPTGKVHEGAPEIGEIYPDVFDVRSFSVRNLPNRWAPWDMAKLVGDMFTDKLRMPC
HHHCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
PVATNLCVEYPDTQASSNKASFKFMRTTSLADSKSARFLPQLRDQSQEWRFVNDEIRQGR
CCCCCCEEECCCCCCCCCCCCEEEEEHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
KLVRVFFSVTSFSPKGRGDANERVLKSVYRAAGWDLLDDRYLQVMGLLCAMPMTMANGLS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RDLERMKRMRTLLTTTAANLAPLQGEYLGGHVPHLLMVGRRGQPFFWSPFENAAGNHNVA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCCEECCHHCCCCCCCEE
VFGKSGSGKSVALQELCASLCGAGAKVVVIDDGRSFEHSAKLQGGAFVEFTMSSGFCLNP
EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEECH
FSMIDEAQAAEDEDYLLDCMAMLKAIVNQMSRHIDRLNDTERGLIDGAVNTVWEAHGRRG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
SIDLVIEALDATGNALAHDLGIAMRPFSAAGTYGRFFQGEVSFELKAQLTVFELSDLSAR
CCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHH
EELRSVVLTAIMFMSQQVMRKVDRAIPKALLLDEAWQLLRGGAMADFIETYARTCRKYGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
SLVTATQSLNDYYKSAGSIAALENSDWFVILQQKPETIADFKKHDRFEMDDYTDALLRSL
HHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHH
KRNGFEYSDIMIKGPETLAVGRLVLDPYSATLFSSSPQTFARIEALIGEGLSMDEAIERI
HHCCCCCCCEEEECCCHHHHHHHEECCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
AFPDNPEKWAANAESDPDVAIAAE
CCCCCHHHHCCCCCCCCCEEEECC
>Mature Secondary Structure 
AKGGFFDSMLSGLFGDAARPDDDRPALGVPMLAHWLPYRSYDPKTGIFYNSASRGFVIE
CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCEEEE
AAPMVGADERTAEIITQFLSEGIPAPGCIQFHQWMSPRVGEALSKWYLPRYAARGVYERM
ECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AKHRVDFLSDGVWQSLSKDAPFCLRHHRVAISYSTPESSSVSDDDIVSVMEGLVSALASV
HHHHHHHHHHHHHHHHCCCCCHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
GITTRRMDPVALIAWIDDITSPTTAAGEDVVSYNPFDPIADQAIRRDIELRVEPDRMLLR
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCHHHHHH
TERFRPTGKVHEGAPEIGEIYPDVFDVRSFSVRNLPNRWAPWDMAKLVGDMFTDKLRMPC
HHHCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
PVATNLCVEYPDTQASSNKASFKFMRTTSLADSKSARFLPQLRDQSQEWRFVNDEIRQGR
CCCCCCEEECCCCCCCCCCCCEEEEEHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
KLVRVFFSVTSFSPKGRGDANERVLKSVYRAAGWDLLDDRYLQVMGLLCAMPMTMANGLS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RDLERMKRMRTLLTTTAANLAPLQGEYLGGHVPHLLMVGRRGQPFFWSPFENAAGNHNVA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCCEECCHHCCCCCCCEE
VFGKSGSGKSVALQELCASLCGAGAKVVVIDDGRSFEHSAKLQGGAFVEFTMSSGFCLNP
EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEECH
FSMIDEAQAAEDEDYLLDCMAMLKAIVNQMSRHIDRLNDTERGLIDGAVNTVWEAHGRRG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
SIDLVIEALDATGNALAHDLGIAMRPFSAAGTYGRFFQGEVSFELKAQLTVFELSDLSAR
CCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHH
EELRSVVLTAIMFMSQQVMRKVDRAIPKALLLDEAWQLLRGGAMADFIETYARTCRKYGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
SLVTATQSLNDYYKSAGSIAALENSDWFVILQQKPETIADFKKHDRFEMDDYTDALLRSL
HHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHH
KRNGFEYSDIMIKGPETLAVGRLVLDPYSATLFSSSPQTFARIEALIGEGLSMDEAIERI
HHCCCCCCCEEEECCCHHHHHHHEECCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
AFPDNPEKWAANAESDPDVAIAAE
CCCCCHHHHCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]