Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550771
Identifier: 148550771
GI number: 148550771
Start: 239796
End: 241328
Strand: Reverse
Name: 148550771
Synonym: Swit_5335
Alternate gene names: NA
Gene position: 241328-239796 (Counterclockwise)
Preceding gene: 148550772
Following gene: 148550770
Centisome position: 77.79
GC content: 62.69
Gene sequence:
>1533_bases ATGCTTGATATCCTGCCTTCCCCGCCGGTCCATGACCATCCGCGCAACGACATGTGGGTGGACGAACAGATCTGGGGCCA CAGGCTCTGGGACTCGACGACCCCCTGGCTGATCTTTTTGGAGTTTCTGGGCGTCGCAGAAGCTTGCGAACGGGAGGGGC GGCTGCTCGACGACGGAGGACAGCCTTATCCGTTGCGGTTCAAACCCGCCCGCCGCCTCTACCTACGCAACATTCTCTAC AACAGTGAGTCCCTGACCCGCCTCGCCGCACGCGGGGGCAACGATGCAGCCGCTTGGGACGAGTGGATCGCCACGATGAA CGAGCGCGCGCAGGGGGTTCCTGTCCGTGACTTTGGCTATCTTCGCCGCCGCTTCACCTCCTTCCGCGATTTTGCGAACC TGGTCGGCATGCTGCGCTCTTCGACGATCGAGAGCGGTAGCAACAAGCGCTGGAGTTCCCGTTTCGTCTTTCCCTTCGGT CGGCATGCCCTCTATGAGGACCTCAATCTTTCGACCGGCACCGCTTCGCGCGAATATATCAACTTCGGACTGCCCGGCGA ACTCATCTACCAGATGCTCTGCCGCTCTTCGTCTGCCGCCGCCCTGCGCCCGCACTTGTCCAAGGCCTTTGGAGGGGACC CCTGCGATCGGCTGCTCGCGCTCGTGGAACCCGACTATGAGGAAGATCGGCAAACCAGGGGCAACGCGTTTCTGCCTTAC CGAACCCACGACTGTTTCGATGAACTCGGGCGGGATTGGCTCGCTGTGCTCGAACTGGGACTGCCACGGTTCGACGCCTA CCCTCATTTGGCCCTTTTGGGCGCGCTACACCTGTTGCGCTATCAGCTCGTTGTCAGCGCCCAAATCACCGAGCGCCCGG CGCCCAGCTTCATTTGCGAGATCGTCGCGCCGCGCAAGACACTGGTGCGCGAGCTTTCGGTGACAAGCTACCAGCGCAAC AACGCCCTGCCCGAGCGCGCGGTCGAACGGTTCGTCGCCGCGATAGCAGAGGAGCCCGATTGGCAAGCCGCGCAGGCTGG CGAGGCGCCTTATACCGATTGCCGCCGCATCCTGGTCGATCGCGTCCGCTGGCCGAGCGCGCAGGATTATGAAGGTCCTC ACGATCCTGAGCAGCTCCTTGGTGAATTTCGCCGGGCCGCCGTCGCCCGCCACCGCAATCATGTCGCCAATGTCCACCGT TCCTACGGCCTGGGCGCGGGTCTTGTGTCGCGGCGCGGCACGACGAGACTGCGCTATGCGCCCACTGACGCTCTCCTCAA GGCGCTTATTCTGGCCAATGTGGGTTCGCGGATGGATTATCGCGGGCTCCTGGCGCGGCTCTACGAGCGCTATGGCCTCG TGATCGGCGAACGAGAGGCACGAATTGCGCTCGATCCTGATGATTATGACGAAAAAGCTTTTGCCGCCAACTCTGCCCGG CTTGAACGACGACTGCGGACCCTGGGCATGCTGCGCCGCCTTTCGGATGCCTGCGCCTATGTCGAAAACCCCATGACTAG GAGCGCAAGGTGA
Upstream 100 bases:
>100_bases GAGCGAGTACGTCCGGCAGACGATCATGGAGACCTCGTGTTCAAGCTTCTGACCCTGAACGAGGCTGGCGAGCCAAAAGA CGAAGTGATCGAGGTCATGG
Downstream 100 bases:
>100_bases CGCCCCGCGAACTCATAGGTCGTGTCGCAGCGAGCTACCTTCGTCGCGAACTGGCCGGTAGCGAGGATGGCGGCACCGCT CGCTACGTCATCGATGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 510; Mature: 510
Protein sequence:
>510_residues MLDILPSPPVHDHPRNDMWVDEQIWGHRLWDSTTPWLIFLEFLGVAEACEREGRLLDDGGQPYPLRFKPARRLYLRNILY NSESLTRLAARGGNDAAAWDEWIATMNERAQGVPVRDFGYLRRRFTSFRDFANLVGMLRSSTIESGSNKRWSSRFVFPFG RHALYEDLNLSTGTASREYINFGLPGELIYQMLCRSSSAAALRPHLSKAFGGDPCDRLLALVEPDYEEDRQTRGNAFLPY RTHDCFDELGRDWLAVLELGLPRFDAYPHLALLGALHLLRYQLVVSAQITERPAPSFICEIVAPRKTLVRELSVTSYQRN NALPERAVERFVAAIAEEPDWQAAQAGEAPYTDCRRILVDRVRWPSAQDYEGPHDPEQLLGEFRRAAVARHRNHVANVHR SYGLGAGLVSRRGTTRLRYAPTDALLKALILANVGSRMDYRGLLARLYERYGLVIGEREARIALDPDDYDEKAFAANSAR LERRLRTLGMLRRLSDACAYVENPMTRSAR
Sequences:
>Translated_510_residues MLDILPSPPVHDHPRNDMWVDEQIWGHRLWDSTTPWLIFLEFLGVAEACEREGRLLDDGGQPYPLRFKPARRLYLRNILY NSESLTRLAARGGNDAAAWDEWIATMNERAQGVPVRDFGYLRRRFTSFRDFANLVGMLRSSTIESGSNKRWSSRFVFPFG RHALYEDLNLSTGTASREYINFGLPGELIYQMLCRSSSAAALRPHLSKAFGGDPCDRLLALVEPDYEEDRQTRGNAFLPY RTHDCFDELGRDWLAVLELGLPRFDAYPHLALLGALHLLRYQLVVSAQITERPAPSFICEIVAPRKTLVRELSVTSYQRN NALPERAVERFVAAIAEEPDWQAAQAGEAPYTDCRRILVDRVRWPSAQDYEGPHDPEQLLGEFRRAAVARHRNHVANVHR SYGLGAGLVSRRGTTRLRYAPTDALLKALILANVGSRMDYRGLLARLYERYGLVIGEREARIALDPDDYDEKAFAANSAR LERRLRTLGMLRRLSDACAYVENPMTRSAR >Mature_510_residues MLDILPSPPVHDHPRNDMWVDEQIWGHRLWDSTTPWLIFLEFLGVAEACEREGRLLDDGGQPYPLRFKPARRLYLRNILY NSESLTRLAARGGNDAAAWDEWIATMNERAQGVPVRDFGYLRRRFTSFRDFANLVGMLRSSTIESGSNKRWSSRFVFPFG RHALYEDLNLSTGTASREYINFGLPGELIYQMLCRSSSAAALRPHLSKAFGGDPCDRLLALVEPDYEEDRQTRGNAFLPY RTHDCFDELGRDWLAVLELGLPRFDAYPHLALLGALHLLRYQLVVSAQITERPAPSFICEIVAPRKTLVRELSVTSYQRN NALPERAVERFVAAIAEEPDWQAAQAGEAPYTDCRRILVDRVRWPSAQDYEGPHDPEQLLGEFRRAAVARHRNHVANVHR SYGLGAGLVSRRGTTRLRYAPTDALLKALILANVGSRMDYRGLLARLYERYGLVIGEREARIALDPDDYDEKAFAANSAR LERRLRTLGMLRRLSDACAYVENPMTRSAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58179; Mature: 58179
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDILPSPPVHDHPRNDMWVDEQIWGHRLWDSTTPWLIFLEFLGVAEACEREGRLLDDGG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEECCCC QPYPLRFKPARRLYLRNILYNSESLTRLAARGGNDAAAWDEWIATMNERAQGVPVRDFGY CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH LRRRFTSFRDFANLVGMLRSSTIESGSNKRWSSRFVFPFGRHALYEDLNLSTGTASREYI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHE NFGLPGELIYQMLCRSSSAAALRPHLSKAFGGDPCDRLLALVEPDYEEDRQTRGNAFLPY ECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCEECCC RTHDCFDELGRDWLAVLELGLPRFDAYPHLALLGALHLLRYQLVVSAQITERPAPSFICE CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH IVAPRKTLVRELSVTSYQRNNALPERAVERFVAAIAEEPDWQAAQAGEAPYTDCRRILVD HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHH RVRWPSAQDYEGPHDPEQLLGEFRRAAVARHRNHVANVHRSYGLGAGLVSRRGTTRLRYA HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEC PTDALLKALILANVGSRMDYRGLLARLYERYGLVIGEREARIALDPDDYDEKAFAANSAR CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEECCCCEEEECCCCCCCHHHHHHHHH LERRLRTLGMLRRLSDACAYVENPMTRSAR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLDILPSPPVHDHPRNDMWVDEQIWGHRLWDSTTPWLIFLEFLGVAEACEREGRLLDDGG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEECCCC QPYPLRFKPARRLYLRNILYNSESLTRLAARGGNDAAAWDEWIATMNERAQGVPVRDFGY CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH LRRRFTSFRDFANLVGMLRSSTIESGSNKRWSSRFVFPFGRHALYEDLNLSTGTASREYI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHE NFGLPGELIYQMLCRSSSAAALRPHLSKAFGGDPCDRLLALVEPDYEEDRQTRGNAFLPY ECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCEECCC RTHDCFDELGRDWLAVLELGLPRFDAYPHLALLGALHLLRYQLVVSAQITERPAPSFICE CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH IVAPRKTLVRELSVTSYQRNNALPERAVERFVAAIAEEPDWQAAQAGEAPYTDCRRILVD HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHH RVRWPSAQDYEGPHDPEQLLGEFRRAAVARHRNHVANVHRSYGLGAGLVSRRGTTRLRYA HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEC PTDALLKALILANVGSRMDYRGLLARLYERYGLVIGEREARIALDPDDYDEKAFAANSAR CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEECCCCEEEECCCCCCCHHHHHHHHH LERRLRTLGMLRRLSDACAYVENPMTRSAR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA