Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550754
Identifier: 148550754
GI number: 148550754
Start: 215288
End: 215968
Strand: Reverse
Name: 148550754
Synonym: Swit_5318
Alternate gene names: NA
Gene position: 215968-215288 (Counterclockwise)
Preceding gene: 148550756
Following gene: 148550753
Centisome position: 69.62
GC content: 60.35
Gene sequence:
>681_bases ATGGCCACTGCAACAGCGTCGGATTTCTCGGACGTCCGTATCAAGCCGCTCACCGGCTCCGCACGCGATTTACGCGCGCG CCTAAAGGACGACGACGGCCCCATCATCGCCTTTCAGCTCGAACATGGCGGTGAAGCTGCAGCCTCTGCTTTTGCCGAAG CGGTGCGGCTGATCGCGCCGATGATCCTGCGCAATCTTGCCAATCGAGAGACGACGACCCTCGAAAAGTTGGTCGATGCG CTGGTACCGGCCGTTTCGCCTCCTGAGCGTCTGCTTACCCAGGCGCGGATGAATGCGGAAGCGCGCAAAGCTGTGTTGGA AGGCGCGGAATGGGTCACTGCGGCCAAATTATCCGAAATCGCAGGGTTTACTGGGCAAAATTCGAGCGCCCAGCCAAATA AATGGAAGCGCGAAGGTAGGATCTTCGCGCTGCGCCACGATGGCAATGATCTCTACCCAGCTTATGCGCTCGACCCGGAG GCGCAGTATCGTCCCGTGAAGAGCCTCGCGCCTATCCTCGAGGTGTTCGGCGACGAACTCGACTCCTGGGATATTGCGAT CTGGTTTGCGTCCACCAATGGTTTCCTGGGCGGCGCGCTTCCCAAGGATCTCCTCGTGAGCGATCCCGGACGCGTCCTGG CAGCGGCACAAGACGAGATTGCCGGCGTGCAGCATGGCTAA
Upstream 100 bases:
>100_bases CGGCACAAAGCGCGGCACATGCTTTTTGGACTCGACCCCTCTCATTGATTATTTAGAATATCATGCTATATGGATATCCA TCATATCCAATGAGGCGATC
Downstream 100 bases:
>100_bases AGGCGCCAAGTCCGGGCCGACAGGCTCTCGGCCCGCCAAGGCTCCGACGCGGAAGAGGACGCTTGCTGCCCTTCCCGCCT CCCCTTTAGCCCCCTCCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MATATASDFSDVRIKPLTGSARDLRARLKDDDGPIIAFQLEHGGEAAASAFAEAVRLIAPMILRNLANRETTTLEKLVDA LVPAVSPPERLLTQARMNAEARKAVLEGAEWVTAAKLSEIAGFTGQNSSAQPNKWKREGRIFALRHDGNDLYPAYALDPE AQYRPVKSLAPILEVFGDELDSWDIAIWFASTNGFLGGALPKDLLVSDPGRVLAAAQDEIAGVQHG
Sequences:
>Translated_226_residues MATATASDFSDVRIKPLTGSARDLRARLKDDDGPIIAFQLEHGGEAAASAFAEAVRLIAPMILRNLANRETTTLEKLVDA LVPAVSPPERLLTQARMNAEARKAVLEGAEWVTAAKLSEIAGFTGQNSSAQPNKWKREGRIFALRHDGNDLYPAYALDPE AQYRPVKSLAPILEVFGDELDSWDIAIWFASTNGFLGGALPKDLLVSDPGRVLAAAQDEIAGVQHG >Mature_225_residues ATATASDFSDVRIKPLTGSARDLRARLKDDDGPIIAFQLEHGGEAAASAFAEAVRLIAPMILRNLANRETTTLEKLVDAL VPAVSPPERLLTQARMNAEARKAVLEGAEWVTAAKLSEIAGFTGQNSSAQPNKWKREGRIFALRHDGNDLYPAYALDPEA QYRPVKSLAPILEVFGDELDSWDIAIWFASTNGFLGGALPKDLLVSDPGRVLAAAQDEIAGVQHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24330; Mature: 24199
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATATASDFSDVRIKPLTGSARDLRARLKDDDGPIIAFQLEHGGEAAASAFAEAVRLIAP CCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH MILRNLANRETTTLEKLVDALVPAVSPPERLLTQARMNAEARKAVLEGAEWVTAAKLSEI HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHH AGFTGQNSSAQPNKWKREGRIFALRHDGNDLYPAYALDPEAQYRPVKSLAPILEVFGDEL HCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCEEEECCCHHCCCHHHHHHHHHHHCCCC DSWDIAIWFASTNGFLGGALPKDLLVSDPGRVLAAAQDEIAGVQHG CCCEEEEEEEECCCCCCCCCCHHHEECCCCCEEEHHHHHHCCCCCC >Mature Secondary Structure ATATASDFSDVRIKPLTGSARDLRARLKDDDGPIIAFQLEHGGEAAASAFAEAVRLIAP CCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH MILRNLANRETTTLEKLVDALVPAVSPPERLLTQARMNAEARKAVLEGAEWVTAAKLSEI HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHH AGFTGQNSSAQPNKWKREGRIFALRHDGNDLYPAYALDPEAQYRPVKSLAPILEVFGDEL HCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCEEEECCCHHCCCHHHHHHHHHHHCCCC DSWDIAIWFASTNGFLGGALPKDLLVSDPGRVLAAAQDEIAGVQHG CCCEEEEEEEECCCCCCCCCCHHHEECCCCCEEEHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA