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The map label for this gene is yagR [H]

Identifier: 148550751

GI number: 148550751

Start: 211666

End: 213918

Strand: Direct

Name: yagR [H]

Synonym: Swit_5315

Alternate gene names: 148550751

Gene position: 211666-213918 (Clockwise)

Preceding gene: 148550750

Following gene: 148550755

Centisome position: 68.23

GC content: 64.27

Gene sequence:

>2253_bases
ATGGCAGCCATCATCGCTCACGACGGCATCGGCGCTCCGCTCAGCCGGGTCGAGGGACTTCTGAAGGTGACCGGCAAGGC
GCGCTATGCCGCCGAATATCCCGCCACTGGCCTGCTCCATGGGGTCGTCGTCAATGCCGCGATCGCGCGCGGGCGGATCA
CCCGGATCGACGACAGTGCCGCACGCGCGGTCGCAGGCGTCGTCGATGTGCTCACCCATGAAAATCGGCTTGAGATCGCA
TCCGCGGACAAGAAATTTCAGGATGACGTCGCCCCGCCCGGCTCGCCCTTGCGCCCCCTGTGCGACGCGCAGATCCACTA
TAATGGCCAGCCGGTCGCCCTCGTCGTCGCCGAGACATTCGAGGCGGCGCGCTATGCGGCAAGTCTCGTCGAGCTCGGCT
ACGAGCAGGATGCGCACAATACCCGGTTCGAAGTCGCGCTTGCGGAAAAGTTCGTGCCCAGGAAGAAGCGGTCAGGATAT
TATCCGCCCAAGAACCGCGGCGACGCGCGCTCGGCCTTCGAGGCCGCACCGGTCACGATCGCCGGCGATTATCACAAGGG
CGCCGAGCACCATAATCCCATGGAGATGCATGCCTCGACCGTCTTCTTCGAAGGAGACGGCAGGCTCACGGTTCATGACA
AGACACAGGGTCCTCAGAATGTGCAGGCCTATCTGGCCGGCGCGTTCGACCTGAAGGCCGACGATGTCCGCGTGCTCAAT
CCCTTTGTCGGCGGCGCGTTTGGTTCGGGGCTGCGACCACAATATAATGTTTATCTGGCAGCCATGGCCGCCTTGAAGCT
GAAACGCTCGGTACGCGTCGTGCTCACCCGCCAGCAGATGTTCACCCATACGCACCGCCCCGAATGCCTCAACTCGATCT
CGCTTGGTGCCGAGCGCGACGGGACTCTGACAGCGATCCTGACCGACGCCACGACCCTGACGTCCAGGTTCGAGAATTAC
ATGGAGACCGTCGTCAACTGGGGCATGATGAACTATGCCTGCGAGAACGCGGAAGGCGCCTCCTATATCGCGCCGGTCGA
CACCTATACGCCTGGCGACATGCGCGCGCCCGGCGCGGCGACCGGCATGACGCAATTCGAGATGGCGATGGACGAGCTGT
CCTACGCGGTCGGCATCGATCCTCTCGACTTGCGGGTGAAGAATTACTCCAACATCGACGCGATGAACGGGACCGAGTTC
ACCAGCAAGGCTCTGCGCGAAGCCTATGCGCAGGGCGCCCAGGCTTTTGGATGGGACAGGCGCAGCCCGCAGCCGCGTTC
GATGCGCGAAGGCAAGGAACTGATCGGCTGGGGCATGGCGACCGGAATGTGGGACGCGATGTTCTCCAAATGCGCGGCCC
GTGCGACGCTCAAGACCGACGGCACGCTCGAAGTCGCAAGCGCGATGTCGGACATCGGCACGGGCACCTACACGGTGATG
ACCCAGGTCGCGGCGGATACGCTCGGACTACCGGCCTCGGCTATCACGGCAAAGCTCGGCGATTCCACACTTCCGCTATC
GCCGGTAGAGGGCGGCTCCTGGGGTGCGGCGTCTGTGGGCGCAGCGGTGCAGCTTGCCTGTCATGGCGTGGCCGCCCGGC
TCGCCAAGGCTGCTGCGAAGATGGACGGCGATCCGCTCGAGGGCGCGAAGCTGGATGACCTGCTCTTCGAGAATGGAACC
ATGCGCCGCCGTGACGGCAAAGGTGAAGCGGTCCCCTTCACGGCGGCGATGGAGGCCGCGGCGCTGGACAGGATCGAGGT
CGAGAAGACAGCGCAGCCTGGCCCCCTCGACATGGTCAGCCTGATGCGCAAGTCGCGCAACACCCATAGCGCGGTGTTCT
GCGAGGTGCGGGTGGACGAGGAGCTGGGCGTCGTCCGTGTGACGCGAGTGGTGAGCGCGATCGCGGCCGGCAGGATCATC
AACCCCAAGACCGCGCGCAGCCAGATACTCGGCGGGGTCGTGATGGGGATCGGCGCGGCGCTGCACGAGGAAAGCTTCCT
CGATCACCGGCTCGGCCGGTTCATGAACAACAATTACGCGGAATATCATGTGCCTGCCCATGCCGACATCCACGATATCG
AGGTGATCTTCGTCCACGAACCCGACCCCGAAGTCACCCCGCTCGGCGTGAAGGGCCTGGGCGAGATCGGTATAGTCGGC
ACTGCGGCCGCAGTCGCAAATGCCATTTATCACGCGACCGGGGTGCGGGTACGCAGCCTGCCGGTCACGATCGACAAGCT
GCTCGTGGACTGA

Upstream 100 bases:

>100_bases
ATCCCGCTTGCGCGGCGCGCGATCGTGCGGGCGCTGTCGCAGGCCGCGGCCGGCACGCCGCAATCGCAAACCGACAAACG
CGTCGCCTGAGGACAGGACC

Downstream 100 bases:

>100_bases
AGCCGCGCTTCCCGCATGGCGCTCCCGGCCACCTGCGGTGATCGCGCGGGATGGCGGGTCGCATGAATGTCAGGGAGCGG
GATATCGGGCGACGATTGCG

Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 749

Protein sequence:

>750_residues
MAAIIAHDGIGAPLSRVEGLLKVTGKARYAAEYPATGLLHGVVVNAAIARGRITRIDDSAARAVAGVVDVLTHENRLEIA
SADKKFQDDVAPPGSPLRPLCDAQIHYNGQPVALVVAETFEAARYAASLVELGYEQDAHNTRFEVALAEKFVPRKKRSGY
YPPKNRGDARSAFEAAPVTIAGDYHKGAEHHNPMEMHASTVFFEGDGRLTVHDKTQGPQNVQAYLAGAFDLKADDVRVLN
PFVGGAFGSGLRPQYNVYLAAMAALKLKRSVRVVLTRQQMFTHTHRPECLNSISLGAERDGTLTAILTDATTLTSRFENY
METVVNWGMMNYACENAEGASYIAPVDTYTPGDMRAPGAATGMTQFEMAMDELSYAVGIDPLDLRVKNYSNIDAMNGTEF
TSKALREAYAQGAQAFGWDRRSPQPRSMREGKELIGWGMATGMWDAMFSKCAARATLKTDGTLEVASAMSDIGTGTYTVM
TQVAADTLGLPASAITAKLGDSTLPLSPVEGGSWGAASVGAAVQLACHGVAARLAKAAAKMDGDPLEGAKLDDLLFENGT
MRRRDGKGEAVPFTAAMEAAALDRIEVEKTAQPGPLDMVSLMRKSRNTHSAVFCEVRVDEELGVVRVTRVVSAIAAGRII
NPKTARSQILGGVVMGIGAALHEESFLDHRLGRFMNNNYAEYHVPAHADIHDIEVIFVHEPDPEVTPLGVKGLGEIGIVG
TAAAVANAIYHATGVRVRSLPVTIDKLLVD

Sequences:

>Translated_750_residues
MAAIIAHDGIGAPLSRVEGLLKVTGKARYAAEYPATGLLHGVVVNAAIARGRITRIDDSAARAVAGVVDVLTHENRLEIA
SADKKFQDDVAPPGSPLRPLCDAQIHYNGQPVALVVAETFEAARYAASLVELGYEQDAHNTRFEVALAEKFVPRKKRSGY
YPPKNRGDARSAFEAAPVTIAGDYHKGAEHHNPMEMHASTVFFEGDGRLTVHDKTQGPQNVQAYLAGAFDLKADDVRVLN
PFVGGAFGSGLRPQYNVYLAAMAALKLKRSVRVVLTRQQMFTHTHRPECLNSISLGAERDGTLTAILTDATTLTSRFENY
METVVNWGMMNYACENAEGASYIAPVDTYTPGDMRAPGAATGMTQFEMAMDELSYAVGIDPLDLRVKNYSNIDAMNGTEF
TSKALREAYAQGAQAFGWDRRSPQPRSMREGKELIGWGMATGMWDAMFSKCAARATLKTDGTLEVASAMSDIGTGTYTVM
TQVAADTLGLPASAITAKLGDSTLPLSPVEGGSWGAASVGAAVQLACHGVAARLAKAAAKMDGDPLEGAKLDDLLFENGT
MRRRDGKGEAVPFTAAMEAAALDRIEVEKTAQPGPLDMVSLMRKSRNTHSAVFCEVRVDEELGVVRVTRVVSAIAAGRII
NPKTARSQILGGVVMGIGAALHEESFLDHRLGRFMNNNYAEYHVPAHADIHDIEVIFVHEPDPEVTPLGVKGLGEIGIVG
TAAAVANAIYHATGVRVRSLPVTIDKLLVD
>Mature_749_residues
AAIIAHDGIGAPLSRVEGLLKVTGKARYAAEYPATGLLHGVVVNAAIARGRITRIDDSAARAVAGVVDVLTHENRLEIAS
ADKKFQDDVAPPGSPLRPLCDAQIHYNGQPVALVVAETFEAARYAASLVELGYEQDAHNTRFEVALAEKFVPRKKRSGYY
PPKNRGDARSAFEAAPVTIAGDYHKGAEHHNPMEMHASTVFFEGDGRLTVHDKTQGPQNVQAYLAGAFDLKADDVRVLNP
FVGGAFGSGLRPQYNVYLAAMAALKLKRSVRVVLTRQQMFTHTHRPECLNSISLGAERDGTLTAILTDATTLTSRFENYM
ETVVNWGMMNYACENAEGASYIAPVDTYTPGDMRAPGAATGMTQFEMAMDELSYAVGIDPLDLRVKNYSNIDAMNGTEFT
SKALREAYAQGAQAFGWDRRSPQPRSMREGKELIGWGMATGMWDAMFSKCAARATLKTDGTLEVASAMSDIGTGTYTVMT
QVAADTLGLPASAITAKLGDSTLPLSPVEGGSWGAASVGAAVQLACHGVAARLAKAAAKMDGDPLEGAKLDDLLFENGTM
RRRDGKGEAVPFTAAMEAAALDRIEVEKTAQPGPLDMVSLMRKSRNTHSAVFCEVRVDEELGVVRVTRVVSAIAAGRIIN
PKTARSQILGGVVMGIGAALHEESFLDHRLGRFMNNNYAEYHVPAHADIHDIEVIFVHEPDPEVTPLGVKGLGEIGIVGT
AAAVANAIYHATGVRVRSLPVTIDKLLVD

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=790, Percent_Identity=23.4177215189873, Blast_Score=118, Evalue=3e-26,
Organism=Homo sapiens, GI91823271, Length=717, Percent_Identity=22.8730822873082, Blast_Score=114, Evalue=5e-25,
Organism=Escherichia coli, GI1786478, Length=743, Percent_Identity=37.8196500672948, Blast_Score=426, Evalue=1e-120,
Organism=Escherichia coli, GI1789230, Length=762, Percent_Identity=28.740157480315, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1789246, Length=779, Percent_Identity=27.214377406932, Blast_Score=176, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI17540638, Length=688, Percent_Identity=22.9651162790698, Blast_Score=108, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17539860, Length=746, Percent_Identity=21.71581769437, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24647199, Length=711, Percent_Identity=24.0506329113924, Blast_Score=134, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24647193, Length=734, Percent_Identity=24.1144414168937, Blast_Score=128, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24647195, Length=755, Percent_Identity=24.1059602649007, Blast_Score=124, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24647197, Length=746, Percent_Identity=24.1286863270777, Blast_Score=117, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24647201, Length=726, Percent_Identity=23.4159779614325, Blast_Score=113, Evalue=4e-25,
Organism=Drosophila melanogaster, GI17737937, Length=713, Percent_Identity=23.2819074333801, Blast_Score=103, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 80292; Mature: 80161

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIIAHDGIGAPLSRVEGLLKVTGKARYAAEYPATGLLHGVVVNAAIARGRITRIDDSA
CEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEECCCHH
ARAVAGVVDVLTHENRLEIASADKKFQDDVAPPGSPLRPLCDAQIHYNGQPVALVVAETF
HHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEEEHHH
EAARYAASLVELGYEQDAHNTRFEVALAEKFVPRKKRSGYYPPKNRGDARSAFEAAPVTI
HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCHHCCCCCCCCCCCCHHHHHHCCCEEE
AGDYHKGAEHHNPMEMHASTVFFEGDGRLTVHDKTQGPQNVQAYLAGAFDLKADDVRVLN
ECCCCCCCCCCCCCEECEEEEEEECCCEEEEECCCCCCHHHHHHHEEEECCCCCCEEEEC
PFVGGAFGSGLRPQYNVYLAAMAALKLKRSVRVVLTRQQMFTHTHRPECLNSISLGAERD
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCHHHHHHHCCCCCCC
GTLTAILTDATTLTSRFENYMETVVNWGMMNYACENAEGASYIAPVDTYTPGDMRAPGAA
CEEEEEEECHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC
TGMTQFEMAMDELSYAVGIDPLDLRVKNYSNIDAMNGTEFTSKALREAYAQGAQAFGWDR
CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHCCCCC
RSPQPRSMREGKELIGWGMATGMWDAMFSKCAARATLKTDGTLEVASAMSDIGTGTYTVM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHCCCCHHHHH
TQVAADTLGLPASAITAKLGDSTLPLSPVEGGSWGAASVGAAVQLACHGVAARLAKAAAK
HHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDGDPLEGAKLDDLLFENGTMRRRDGKGEAVPFTAAMEAAALDRIEVEKTAQPGPLDMVS
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LMRKSRNTHSAVFCEVRVDEELGVVRVTRVVSAIAAGRIINPKTARSQILGGVVMGIGAA
HHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LHEESFLDHRLGRFMNNNYAEYHVPAHADIHDIEVIFVHEPDPEVTPLGVKGLGEIGIVG
HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEH
TAAAVANAIYHATGVRVRSLPVTIDKLLVD
HHHHHHHHHHHHCCCEEEECCEEHHHHHCC
>Mature Secondary Structure 
AAIIAHDGIGAPLSRVEGLLKVTGKARYAAEYPATGLLHGVVVNAAIARGRITRIDDSA
EEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEECCCHH
ARAVAGVVDVLTHENRLEIASADKKFQDDVAPPGSPLRPLCDAQIHYNGQPVALVVAETF
HHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEEEHHH
EAARYAASLVELGYEQDAHNTRFEVALAEKFVPRKKRSGYYPPKNRGDARSAFEAAPVTI
HHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCHHCCCCCCCCCCCCHHHHHHCCCEEE
AGDYHKGAEHHNPMEMHASTVFFEGDGRLTVHDKTQGPQNVQAYLAGAFDLKADDVRVLN
ECCCCCCCCCCCCCEECEEEEEEECCCEEEEECCCCCCHHHHHHHEEEECCCCCCEEEEC
PFVGGAFGSGLRPQYNVYLAAMAALKLKRSVRVVLTRQQMFTHTHRPECLNSISLGAERD
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCHHHHHHHCCCCCCC
GTLTAILTDATTLTSRFENYMETVVNWGMMNYACENAEGASYIAPVDTYTPGDMRAPGAA
CEEEEEEECHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC
TGMTQFEMAMDELSYAVGIDPLDLRVKNYSNIDAMNGTEFTSKALREAYAQGAQAFGWDR
CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHCCCCC
RSPQPRSMREGKELIGWGMATGMWDAMFSKCAARATLKTDGTLEVASAMSDIGTGTYTVM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHCCCCHHHHH
TQVAADTLGLPASAITAKLGDSTLPLSPVEGGSWGAASVGAAVQLACHGVAARLAKAAAK
HHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDGDPLEGAKLDDLLFENGTMRRRDGKGEAVPFTAAMEAAALDRIEVEKTAQPGPLDMVS
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LMRKSRNTHSAVFCEVRVDEELGVVRVTRVVSAIAAGRIINPKTARSQILGGVVMGIGAA
HHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LHEESFLDHRLGRFMNNNYAEYHVPAHADIHDIEVIFVHEPDPEVTPLGVKGLGEIGIVG
HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEH
TAAAVANAIYHATGVRVRSLPVTIDKLLVD
HHHHHHHHHHHHCCCEEEECCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]