Click here to switch to the map view.

The map label for this gene is cbpA [C]

Identifier: 148550742

GI number: 148550742

Start: 204082

End: 204975

Strand: Direct

Name: cbpA [C]

Synonym: Swit_5306

Alternate gene names: 148550742

Gene position: 204082-204975 (Clockwise)

Preceding gene: 148550741

Following gene: 148550743

Centisome position: 65.78

GC content: 64.21

Gene sequence:

>894_bases
TTGAGCAGTCCTTATGAGGTCTTGGAGGTATCGCCGACAGCCTCGGCGGATGAAATTCAGAAGGCCTACCGAAAGCTGGC
CAAGACCCTCCATCCCGATCTCAATCCTGGCGACCGGACGGCTGAAGACAAGTTCAAAGCCGTCGCGGGAGCCTATGATC
TCCTTCGTGATCCCGAAAAGAGGCGTCGCTTCGACGCCGGCGAGATCGACGAGACCGGCGCCGAGCGACCGCCGCAGGGC
TATTACCGGGACTATGCCAGCAACGATTACGGCCGATATGCCAACAGCGGCGGCTTTGCGGATTTCGACGAGGACCTGTT
CGCCGACTTGTTCCGGCAACGCGGGAGAGCGCAGCCCAATCGGCGCGGCGAGGATCTCCAGTTCCGCCTGGGCCTGACCT
TGGCACAGGCGATCACGGGCGGCGAACAGCGACTGACCCTGCCGGGTGGTGGTACGCTCGACGTCAAGATTCCCGCCGGG
GTCGTCGATGGCCAGACATTGCGCCTCAAGGGCAAGGGCGGGATGGGCTTTGGCAGCGGCGGCCCCGGTGACGCCTACAT
CATGCTCGAGGTTCTGCCCGATCCGCGATTTGCGCGAGAAGGCGATGATCTCGTTCTCGAGGTTCCGATCTCGCTGAGCG
AAGCGGTGCTTGGCGGCAAGATCCAGGTGGCGACACCCACGAGCCAGGTGTCGATGACGGTGCCGGCCGGTTCGAACAGC
GGCAGCACATTGCGGCTGAAGGGGCAGGGGGCCCCGCGCGGAGGCGGCGGCCGCGGCGACGAACTGGTCAGGCTTAAGAT
CGTACTGCCCAAGCCGACCGATCCGGAGCTCGAAGCCTTCGTGAAAAGCTGGGAGGCGGGCAGGGCACATAATCCGCGGG
AGACAAGCCGATGA

Upstream 100 bases:

>100_bases
CAGTCCCAACCGAAATCTTGTTTTTGTCCCGACCGCAACAAAATTGGATGAGCGCGGCTATACCGCGCTGGGCCAATGAT
ACAGGAGCGAGGGCACGACG

Downstream 100 bases:

>100_bases
TCGACCTGGACGACTTCCTGCAGCGCACGGGTATCGCACGGCAGGTTCTGACGACCTGGATCGAGCGCGAATGGCTGGTC
GCCGAGCACCCCGGCACGTT

Product: heat shock protein DnaJ domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSSPYEVLEVSPTASADEIQKAYRKLAKTLHPDLNPGDRTAEDKFKAVAGAYDLLRDPEKRRRFDAGEIDETGAERPPQG
YYRDYASNDYGRYANSGGFADFDEDLFADLFRQRGRAQPNRRGEDLQFRLGLTLAQAITGGEQRLTLPGGGTLDVKIPAG
VVDGQTLRLKGKGGMGFGSGGPGDAYIMLEVLPDPRFAREGDDLVLEVPISLSEAVLGGKIQVATPTSQVSMTVPAGSNS
GSTLRLKGQGAPRGGGGRGDELVRLKIVLPKPTDPELEAFVKSWEAGRAHNPRETSR

Sequences:

>Translated_297_residues
MSSPYEVLEVSPTASADEIQKAYRKLAKTLHPDLNPGDRTAEDKFKAVAGAYDLLRDPEKRRRFDAGEIDETGAERPPQG
YYRDYASNDYGRYANSGGFADFDEDLFADLFRQRGRAQPNRRGEDLQFRLGLTLAQAITGGEQRLTLPGGGTLDVKIPAG
VVDGQTLRLKGKGGMGFGSGGPGDAYIMLEVLPDPRFAREGDDLVLEVPISLSEAVLGGKIQVATPTSQVSMTVPAGSNS
GSTLRLKGQGAPRGGGGRGDELVRLKIVLPKPTDPELEAFVKSWEAGRAHNPRETSR
>Mature_296_residues
SSPYEVLEVSPTASADEIQKAYRKLAKTLHPDLNPGDRTAEDKFKAVAGAYDLLRDPEKRRRFDAGEIDETGAERPPQGY
YRDYASNDYGRYANSGGFADFDEDLFADLFRQRGRAQPNRRGEDLQFRLGLTLAQAITGGEQRLTLPGGGTLDVKIPAGV
VDGQTLRLKGKGGMGFGSGGPGDAYIMLEVLPDPRFAREGDDLVLEVPISLSEAVLGGKIQVATPTSQVSMTVPAGSNSG
STLRLKGQGAPRGGGGRGDELVRLKIVLPKPTDPELEAFVKSWEAGRAHNPRETSR

Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360840, Length=342, Percent_Identity=25.4385964912281, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI7706495, Length=305, Percent_Identity=28.8524590163934, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI205360838, Length=346, Percent_Identity=24.5664739884393, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI194328758, Length=143, Percent_Identity=32.1678321678322, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI194328760, Length=143, Percent_Identity=32.1678321678322, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4504511, Length=153, Percent_Identity=31.3725490196078, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI27151736, Length=66, Percent_Identity=53.030303030303, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI88501736, Length=66, Percent_Identity=53.030303030303, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI5031741, Length=61, Percent_Identity=54.0983606557377, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI23503241, Length=71, Percent_Identity=49.2957746478873, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI22749377, Length=89, Percent_Identity=43.8202247191011, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21361912, Length=79, Percent_Identity=44.3037974683544, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI56687498, Length=118, Percent_Identity=38.9830508474576, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787235, Length=304, Percent_Identity=33.5526315789474, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1786197, Length=339, Percent_Identity=30.3834808259587, Blast_Score=121, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17553096, Length=135, Percent_Identity=30.3703703703704, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17553098, Length=135, Percent_Identity=30.3703703703704, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI212645553, Length=61, Percent_Identity=50.8196721311475, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=50.7936507936508, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324265, Length=145, Percent_Identity=34.4827586206897, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323870, Length=61, Percent_Identity=47.5409836065574, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322194, Length=83, Percent_Identity=44.578313253012, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19920464, Length=320, Percent_Identity=28.125, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI18858081, Length=333, Percent_Identity=25.2252252252252, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24658562, Length=324, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24658555, Length=324, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI20129487, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24584014, Length=61, Percent_Identity=57.3770491803279, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24646562, Length=63, Percent_Identity=49.2063492063492, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646560, Length=63, Percent_Identity=49.2063492063492, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646558, Length=63, Percent_Identity=49.2063492063492, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646556, Length=63, Percent_Identity=49.2063492063492, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357547, Length=63, Percent_Identity=49.2063492063492, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 31989; Mature: 31858

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPYEVLEVSPTASADEIQKAYRKLAKTLHPDLNPGDRTAEDKFKAVAGAYDLLRDPEK
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
RRRFDAGEIDETGAERPPQGYYRDYASNDYGRYANSGGFADFDEDLFADLFRQRGRAQPN
HHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
RRGEDLQFRLGLTLAQAITGGEQRLTLPGGGTLDVKIPAGVVDGQTLRLKGKGGMGFGSG
CCCCCEEEEECHHHHHHHCCCCEEEECCCCCEEEEEECCCEECCCEEEEECCCCCCCCCC
GPGDAYIMLEVLPDPRFAREGDDLVLEVPISLSEAVLGGKIQVATPTSQVSMTVPAGSNS
CCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHCCEEEEECCCCEEEEEECCCCCC
GSTLRLKGQGAPRGGGGRGDELVRLKIVLPKPTDPELEAFVKSWEAGRAHNPRETSR
CCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SSPYEVLEVSPTASADEIQKAYRKLAKTLHPDLNPGDRTAEDKFKAVAGAYDLLRDPEK
CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
RRRFDAGEIDETGAERPPQGYYRDYASNDYGRYANSGGFADFDEDLFADLFRQRGRAQPN
HHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
RRGEDLQFRLGLTLAQAITGGEQRLTLPGGGTLDVKIPAGVVDGQTLRLKGKGGMGFGSG
CCCCCEEEEECHHHHHHHCCCCEEEECCCCCEEEEEECCCEECCCEEEEECCCCCCCCCC
GPGDAYIMLEVLPDPRFAREGDDLVLEVPISLSEAVLGGKIQVATPTSQVSMTVPAGSNS
CCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHCCEEEEECCCCEEEEEECCCCCC
GSTLRLKGQGAPRGGGGRGDELVRLKIVLPKPTDPELEAFVKSWEAGRAHNPRETSR
CCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]