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The map label for this gene is speE [H]

Identifier: 148550708

GI number: 148550708

Start: 167881

End: 168726

Strand: Reverse

Name: speE [H]

Synonym: Swit_5272

Alternate gene names: 148550708

Gene position: 168726-167881 (Counterclockwise)

Preceding gene: 148550709

Following gene: 148550707

Centisome position: 54.39

GC content: 64.07

Gene sequence:

>846_bases
ATGGTCTTCGATTTGCGGTTCGATCGGCCTGCGCCAGGCAGCAATCTCGAGGGCCGCTTCCGGGGCGCGGGGAACATCCC
GATCGCGCTCGACGCGCCTTTTGGCGAGACGGGGCCGATGCTGTTCCGGTTCGGTGACATGTTGTCGCTCCTCTTCGACT
GGACCACCGTTCAGAGCGGCATGCGGATCAGCGATCCCGACCATCTCCTGTTCGACTATACGCGCATGATGATGGGCTTC
CGCCTGTTCCGACCCGCGCCGCGAAAGATCGAAATGATCGGGCTGGGTGGCGGATCGCTCGCCAAGGCCTGCTATCGCTG
CCTGCCCCAGTGCGACATCACCGTGGTCGAGATCGATCCTGCAGTCATCGCCCTGCGCGAGCAGTTCCACATTCCGCCCG
ACAATGACCGGTTCCGCGTGATCTGCGCCGATGGCCTGGACTATATCCTCAGCGCCCCCGGCGCGCCCGACATCCTTATT
CTCGACGGCTTTGACAGCCGGGGCCTTCCCCCGGCGCTGAGCGAGCGGTCCTTCTACGACAGCTGCCGAAATCGCCTCGG
CAGAAACGGGCTGCTAGTGGCCAATCTGTGCGACAATGCCATGGCCTTTGCCACGCTCGAACGCCGTATCGGGGCCAGCT
TCGAGAACCGCACGATCGTCGTTCCGGCCGAAAATGGCGGGAACCGTGTCGTCTTCGCGAGCATCGACCGCGGGTTTCCA
CCCGCGCGCCAGACCGTTCGCGGCCATCTGCCCGATACGGATGTCGTCGATTACGATGCCAAGGCTCGCAGGGTCGTCCG
AGCCCTTGCGCGCGCTTCGCTCAAGGTGCCCCGAACCGAGCATTAA

Upstream 100 bases:

>100_bases
ATCGCCGCGACGTGAACCTGACACCCTCGGCGAAGGCGCCGCGCCCATGACCGACGGGGGCGGGGTAGGGCCGTCGATCG
ATCTCGAGCTGTTTCACGAC

Downstream 100 bases:

>100_bases
ATTTGGTTTGAACGGGCTCTGCAGCCAACGTCCACCCCAAGGAGGAGGAAAGGGGGGAACAGGACGGTAAGCAAGGAGGA
TATCATGCCGCTTACAGCTC

Product: spermidine synthase-like protein

Products: NA

Alternate protein names: Putrescine aminopropyltransferase; PAPT; SPDSY [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MVFDLRFDRPAPGSNLEGRFRGAGNIPIALDAPFGETGPMLFRFGDMLSLLFDWTTVQSGMRISDPDHLLFDYTRMMMGF
RLFRPAPRKIEMIGLGGGSLAKACYRCLPQCDITVVEIDPAVIALREQFHIPPDNDRFRVICADGLDYILSAPGAPDILI
LDGFDSRGLPPALSERSFYDSCRNRLGRNGLLVANLCDNAMAFATLERRIGASFENRTIVVPAENGGNRVVFASIDRGFP
PARQTVRGHLPDTDVVDYDAKARRVVRALARASLKVPRTEH

Sequences:

>Translated_281_residues
MVFDLRFDRPAPGSNLEGRFRGAGNIPIALDAPFGETGPMLFRFGDMLSLLFDWTTVQSGMRISDPDHLLFDYTRMMMGF
RLFRPAPRKIEMIGLGGGSLAKACYRCLPQCDITVVEIDPAVIALREQFHIPPDNDRFRVICADGLDYILSAPGAPDILI
LDGFDSRGLPPALSERSFYDSCRNRLGRNGLLVANLCDNAMAFATLERRIGASFENRTIVVPAENGGNRVVFASIDRGFP
PARQTVRGHLPDTDVVDYDAKARRVVRALARASLKVPRTEH
>Mature_281_residues
MVFDLRFDRPAPGSNLEGRFRGAGNIPIALDAPFGETGPMLFRFGDMLSLLFDWTTVQSGMRISDPDHLLFDYTRMMMGF
RLFRPAPRKIEMIGLGGGSLAKACYRCLPQCDITVVEIDPAVIALREQFHIPPDNDRFRVICADGLDYILSAPGAPDILI
LDGFDSRGLPPALSERSFYDSCRNRLGRNGLLVANLCDNAMAFATLERRIGASFENRTIVVPAENGGNRVVFASIDRGFP
PARQTVRGHLPDTDVVDYDAKARRVVRALARASLKVPRTEH

Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the spermidine/spermine synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001045 [H]

Pfam domain/function: PF01564 Spermine_synth [H]

EC number: =2.5.1.16 [H]

Molecular weight: Translated: 31143; Mature: 31143

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFDLRFDRPAPGSNLEGRFRGAGNIPIALDAPFGETGPMLFRFGDMLSLLFDWTTVQSG
CEEEEECCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
MRISDPDHLLFDYTRMMMGFRLFRPAPRKIEMIGLGGGSLAKACYRCLPQCDITVVEIDP
CEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECC
AVIALREQFHIPPDNDRFRVICADGLDYILSAPGAPDILILDGFDSRGLPPALSERSFYD
HHEEEHHHCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
SCRNRLGRNGLLVANLCDNAMAFATLERRIGASFENRTIVVPAENGGNRVVFASIDRGFP
HHHHHHCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCCC
PARQTVRGHLPDTDVVDYDAKARRVVRALARASLKVPRTEH
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVFDLRFDRPAPGSNLEGRFRGAGNIPIALDAPFGETGPMLFRFGDMLSLLFDWTTVQSG
CEEEEECCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
MRISDPDHLLFDYTRMMMGFRLFRPAPRKIEMIGLGGGSLAKACYRCLPQCDITVVEIDP
CEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECC
AVIALREQFHIPPDNDRFRVICADGLDYILSAPGAPDILILDGFDSRGLPPALSERSFYD
HHEEEHHHCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
SCRNRLGRNGLLVANLCDNAMAFATLERRIGASFENRTIVVPAENGGNRVVFASIDRGFP
HHHHHHCCCCEEEEEHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCCC
PARQTVRGHLPDTDVVDYDAKARRVVRALARASLKVPRTEH
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]