Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
---|---|
Accession | NC_009507 |
Length | 310,228 |
Click here to switch to the map view.
The map label for this gene is 148550648
Identifier: 148550648
GI number: 148550648
Start: 99231
End: 99884
Strand: Direct
Name: 148550648
Synonym: Swit_5210
Alternate gene names: NA
Gene position: 99231-99884 (Clockwise)
Preceding gene: 148550646
Following gene: 148550649
Centisome position: 31.99
GC content: 68.04
Gene sequence:
>654_bases ATGGTTGGTCGCGTATTTGCTGAGCGACATGGCCTTGCGGTTGAGCGCCACCGCGAGATCGGCGAGCGACACACCGGTGT TGAAGGCGACGTCGAGCGCGCGCGTTTCATCGTCGCTGAAAGGCCGAATGTAGCCGTGGACAAGGCCGAGGCTATTCGCG CGCGAGGTGAGCGCAGCTTTGGTCCGTCCCAGGCTTGCCGCCAGGACCTTGGTCGGGACACGGCCATAGTCCGCACGAAG GCGCGCCTCGTCGGCCTCGGTCCAGTCCGGACCAAGCCGCCAGCCATTGCGGTTGGCATGAAGCCCGCGCAGGCCCAGAT ATTCGGCGCGGTGGCGCAGCGATCCAGCGGTGCGGCCAAGCTGGCGGCGCAGCGGGGTGAGACTCGTACCGTCGATGTAG GCCTTGCGCAGCAGGGCGTCTTCTTCCGGCGTCCAGGCCCTGCCCCAGCCGCGGCCATAGCCCAGCTTGCGGATGGCGAG GCCGAAGCCGCGGACCGTGCGTTGGGGAAAGCCTTCCTGGCCGAGCATCCCGACGATCGCCGTGTAGCGATGACCCGCTT CGGCCAGGTCGAGAGCCCTCGCCGTTTCCGCCTCCGACCAGTCCGGCGGATGGTTCGCATGCACGATGCCGAGAGCTCCG GCCCGGCTGGATAG
Upstream 100 bases:
>100_bases GGCTCGGGCGAATGGCTCGGCGCCCGAGCCCGGGTCAGTTCGTGGCCAAGAGCGCTTCGAGCGTCACGGCGCGGCGCGGC CGGCGGCCGAACTGATAGCC
Downstream 100 bases:
>100_bases GCCGCCGAACGGCCGGCCGATAAGGGTGGCGATCTGCGCCAACGGCACGCCGCGGCGATAGCCTTCGACGAGCTGGGCGT CCTCCCAGGGCGTCCATTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MVGRVFAERHGLAVERHREIGERHTGVEGDVERARFIVAERPNVAVDKAEAIRARGERSFGPSQACRQDLGRDTAIVRTK ARLVGLGPVRTKPPAIAVGMKPAQAQIFGAVAQRSSGAAKLAAQRGETRTVDVGLAQQGVFFRRPGPAPAAAIAQLADGE AEAADRALGKAFLAEHPDDRRVAMTRFGQVESPRRFRLRPVRRMVRMHDAESSGPAG
Sequences:
>Translated_217_residues MVGRVFAERHGLAVERHREIGERHTGVEGDVERARFIVAERPNVAVDKAEAIRARGERSFGPSQACRQDLGRDTAIVRTK ARLVGLGPVRTKPPAIAVGMKPAQAQIFGAVAQRSSGAAKLAAQRGETRTVDVGLAQQGVFFRRPGPAPAAAIAQLADGE AEAADRALGKAFLAEHPDDRRVAMTRFGQVESPRRFRLRPVRRMVRMHDAESSGPAG >Mature_217_residues MVGRVFAERHGLAVERHREIGERHTGVEGDVERARFIVAERPNVAVDKAEAIRARGERSFGPSQACRQDLGRDTAIVRTK ARLVGLGPVRTKPPAIAVGMKPAQAQIFGAVAQRSSGAAKLAAQRGETRTVDVGLAQQGVFFRRPGPAPAAAIAQLADGE AEAADRALGKAFLAEHPDDRRVAMTRFGQVESPRRFRLRPVRRMVRMHDAESSGPAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23409; Mature: 23409
Theoretical pI: Translated: 11.82; Mature: 11.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGRVFAERHGLAVERHREIGERHTGVEGDVERARFIVAERPNVAVDKAEAIRARGERSF CCCCHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHCCCCCC GPSQACRQDLGRDTAIVRTKARLVGLGPVRTKPPAIAVGMKPAQAQIFGAVAQRSSGAAK CHHHHHHHHHCCCCEEEEHHHHEEECCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHH LAAQRGETRTVDVGLAQQGVFFRRPGPAPAAAIAQLADGEAEAADRALGKAFLAEHPDDR HHHHCCCCEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC RVAMTRFGQVESPRRFRLRPVRRMVRMHDAESSGPAG HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MVGRVFAERHGLAVERHREIGERHTGVEGDVERARFIVAERPNVAVDKAEAIRARGERSF CCCCHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHCCCCCC GPSQACRQDLGRDTAIVRTKARLVGLGPVRTKPPAIAVGMKPAQAQIFGAVAQRSSGAAK CHHHHHHHHHCCCCEEEEHHHHEEECCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHH LAAQRGETRTVDVGLAQQGVFFRRPGPAPAAAIAQLADGEAEAADRALGKAFLAEHPDDR HHHHCCCCEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC RVAMTRFGQVESPRRFRLRPVRRMVRMHDAESSGPAG HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA