| Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
|---|---|
| Accession | NC_009507 |
| Length | 310,228 |
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The map label for this gene is tnpA [C]
Identifier: 148550564
GI number: 148550564
Start: 9061
End: 11685
Strand: Reverse
Name: tnpA [C]
Synonym: Swit_5125
Alternate gene names: 148550564
Gene position: 11685-9061 (Counterclockwise)
Preceding gene: 148550567
Following gene: 148550562
Centisome position: 3.77
GC content: 59.2
Gene sequence:
>2625_bases ATGGATCGGAGTATTCCGGGCGGGGATTTGATCGGACGATGGAGCCTGAGCTTTGCCGATATTGATTTTGTAAATTCGAA GCCGGCCCTGACGCGCCTTGGCCTCGCCGCGCAGCTGAAATTCTTCGCTTCCCTGGGGTTTTTCGCGATCGATCCCGGCT CAATCCCTACCGATGGCCTCTCGTATCTGGCCGAGCAACTCGGTGTCGAGGCTGGCGAGATAGCCGGTTATGACTTTTCC AGTCGGACAGCACGACGGCATTGTGCGGAGATCCTGATCCATCTTGGATATCACCGCATGAAGCGGGTGGATCGCGCGCA ATTGACGGAATGGATTGCTGGCGAGCTGTGCCCGGGCGGCCAGTCGATCAATGCCATGCTTGAGCATGTTTTCCTGTGGT GCCGGGACCGGCGTATTTATGGGCCGTCGCGCAAGGAGCTTGAACGTGTCGTTCGCTCACAACGGCAAGATTATCTGGAC ACCTGGCTGATCGGAACCAGTGATCGGCTTTCGTCAGATGCGGTGGCGTTATTGGAAGCCTCGCTTGCCGATCCGGACAG CTCGACCGGATTCAACAGGATGAAGGGTGACGCCGGACAGGCAACGCTCGACAACATTCTCGACGTGACCGAGAAACTCG CCTTTATCCAGAGACTTGATCTTCCCCATGATCTCCTGACGGCTACGGGCAAGCCATGGGTCGATCAGATTGTTCGCCGC GTTGCCGGTGAAAAGGCCTCGGAGATGCGCCGGCATGCGCCGGCGCGACAGCTCGGCCTTTATGCGATTTATCTAATGTC GCGGGAGGCGCAACTCACTGACGCGATGATCGACCTGCTGATCGAAACCGTTCACAAGATCGGAACGCGCTCGAAACGCA AGGTGGTGGGCGATATCGCGAAAGACATCGAGCGGGTCTATGGAAAGGAGCGCCTGCTGGTCGAGATCGCCAGCGCCTCG ATCAATGAACCATCGGGGCGCATCTGCGATGTCATTTTCCCGATCGCCGGTAAGGCCAAGCTGGCGGCGATCGTCAAGGA GAGCCATGCGAAGGGCGCTCTGGACCGGCGCATCTACAAGGTGATGCGTGGTTCCTGGGCCAATCATTACCGGCGCATGC TGCCAAGCCTGCTTTCCGTACTTGAGTTCCGGTCGAACAACGCGGTGTGGCGGCCGGTCCTGGCGGCCCTCGACTGGATC AGGAGCAAGGTGGATGGCGGATGCCGCTTCGTGCCATTGCAGGATGTTCCGATCGATGAGGTGATTCCAGCGCGATGGCG CAGTTCCGTCATTGATGACGATGGGCGGGTAAACCGGATCAGCTATGAGCTTTGCGTCCTGACGCAACTGCGCGACCGCA TCCGCTCCAAAGAAATCTGGGTGGTCGGGGCGGATCGCTATCGCAATCCCGATGACGATCTTCCCAAGGACTTCGAGATC AGGCGAGATGCGTACTATTCCGGCCTCAGCCTGACGCCAGATGCGCAGGCGTTTTGCGCCTCGATCCGGGAGGAGCTTGA ACGGGAACTGTTGCTCCTCAATGCCAATATTCCACAAAACGACAAGGTCCGGCTCCTGTGGCGCGGCGACAACCGGATAT CGATTACACCGTTCAAGCCCTTGCCCGAACCGAAGGGTCTCGCTTCGATCAAAAGCGAGATCGGTCAGCGCTGGCCGATG ACCGGACTGCTGGACGTGTTGAAAGAGGCTGCTCTGGACACGGGATTGATGGATGCTTTCGAAACGTCGGCCTCGCGGGT TACCCTGTCGAAAGCAGCCTTGGCTCAGCGTCTTTTGCTGTGTCTCTATGGCTTGGGCACGAACGCCGGGCTCAAGCGGG TCGCTGGCGCAACACCCGATGTCAGTTACGAGGAATTGCTGCATGTCCATCGCCGTTTCATCCACGCGCCAGCGCTGAGG GAGGCGTGCGCGCGGGTAGCAAACGCGACACTGGCAATCCGCAATGCCGCAGTATGGGGAGATGCGGGCACGGCATGCGC GTCCGATTCAACGAAGTTCGGCGCGTGGGACCGCAACCTGATGACGGAATGGCACGCCCGCTATGGCGGCCGTGGCGTCA TGATCTACTGGCATGTGGAGAAGCGCGCGACCTGCGTTTATTCCCAGCTCAAGCGGTGCTCTTCCTCGGAGGTCGCCTCC ATGATCGAAGGCGTGCTACGCCATTGCACCGACATGGAAATCCAGCGCCAGTACGTCGATAGCCACGGCCAGAGCGCAGT CGGCTTTGCGTTCTGCCGACTCCTTGGATTTGAGCTTGCCCCGCGGCTGAAAGCAGTGGCACGCCAGAAACTGGCCCTTC CCCAAGCCGGCATGCGCACGCGGCTTTCCAATTTACTGCCGATCCTCTCCAGCCCGATCGACTGGGACGAGATCGAGCAA CAATATGACGAAATGGTCAAATATGCCGCTGCCATGCAATCGCGCACCGCCGATCCGGAAGCGATCCTGCTCCGGTTTGC CAGAGCCGAAGTGATGCACCCGACCTACAAGGCGCTGAGTGAACTCGGCCGCGCGGTCAAAACAATCTTCCTATGCCGGT ATTTGCGTCAGGAGGCATTCCGCCGCGAGATCCACGAAGGGCTGAATGTGGTTGTATTCTGTTGA
Upstream 100 bases:
>100_bases ATTTTGGCCAAGTCGGAGAACGTTTTGGGAACGTGGCATTCGGTATTGACGATGGAAATCATAGAAGAGGACAGTTCGCT CCATCATAGGGAGTGGGTTG
Downstream 100 bases:
>100_bases AGAAGTCAGCTGCGAGACCGTTTGACTGCGCTTCGCGATGGACGCGAGCGACGTCCTTTGCCGATCAGGCCGGTGCGGGC CTGGCCATCGGGATGATCTT
Product: transposase Tn3 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MDRSIPGGDLIGRWSLSFADIDFVNSKPALTRLGLAAQLKFFASLGFFAIDPGSIPTDGLSYLAEQLGVEAGEIAGYDFS SRTARRHCAEILIHLGYHRMKRVDRAQLTEWIAGELCPGGQSINAMLEHVFLWCRDRRIYGPSRKELERVVRSQRQDYLD TWLIGTSDRLSSDAVALLEASLADPDSSTGFNRMKGDAGQATLDNILDVTEKLAFIQRLDLPHDLLTATGKPWVDQIVRR VAGEKASEMRRHAPARQLGLYAIYLMSREAQLTDAMIDLLIETVHKIGTRSKRKVVGDIAKDIERVYGKERLLVEIASAS INEPSGRICDVIFPIAGKAKLAAIVKESHAKGALDRRIYKVMRGSWANHYRRMLPSLLSVLEFRSNNAVWRPVLAALDWI RSKVDGGCRFVPLQDVPIDEVIPARWRSSVIDDDGRVNRISYELCVLTQLRDRIRSKEIWVVGADRYRNPDDDLPKDFEI RRDAYYSGLSLTPDAQAFCASIREELERELLLLNANIPQNDKVRLLWRGDNRISITPFKPLPEPKGLASIKSEIGQRWPM TGLLDVLKEAALDTGLMDAFETSASRVTLSKAALAQRLLLCLYGLGTNAGLKRVAGATPDVSYEELLHVHRRFIHAPALR EACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVEKRATCVYSQLKRCSSSEVAS MIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAVARQKLALPQAGMRTRLSNLLPILSSPIDWDEIEQ QYDEMVKYAAAMQSRTADPEAILLRFARAEVMHPTYKALSELGRAVKTIFLCRYLRQEAFRREIHEGLNVVVFC
Sequences:
>Translated_874_residues MDRSIPGGDLIGRWSLSFADIDFVNSKPALTRLGLAAQLKFFASLGFFAIDPGSIPTDGLSYLAEQLGVEAGEIAGYDFS SRTARRHCAEILIHLGYHRMKRVDRAQLTEWIAGELCPGGQSINAMLEHVFLWCRDRRIYGPSRKELERVVRSQRQDYLD TWLIGTSDRLSSDAVALLEASLADPDSSTGFNRMKGDAGQATLDNILDVTEKLAFIQRLDLPHDLLTATGKPWVDQIVRR VAGEKASEMRRHAPARQLGLYAIYLMSREAQLTDAMIDLLIETVHKIGTRSKRKVVGDIAKDIERVYGKERLLVEIASAS INEPSGRICDVIFPIAGKAKLAAIVKESHAKGALDRRIYKVMRGSWANHYRRMLPSLLSVLEFRSNNAVWRPVLAALDWI RSKVDGGCRFVPLQDVPIDEVIPARWRSSVIDDDGRVNRISYELCVLTQLRDRIRSKEIWVVGADRYRNPDDDLPKDFEI RRDAYYSGLSLTPDAQAFCASIREELERELLLLNANIPQNDKVRLLWRGDNRISITPFKPLPEPKGLASIKSEIGQRWPM TGLLDVLKEAALDTGLMDAFETSASRVTLSKAALAQRLLLCLYGLGTNAGLKRVAGATPDVSYEELLHVHRRFIHAPALR EACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVEKRATCVYSQLKRCSSSEVAS MIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAVARQKLALPQAGMRTRLSNLLPILSSPIDWDEIEQ QYDEMVKYAAAMQSRTADPEAILLRFARAEVMHPTYKALSELGRAVKTIFLCRYLRQEAFRREIHEGLNVVVFC >Mature_874_residues MDRSIPGGDLIGRWSLSFADIDFVNSKPALTRLGLAAQLKFFASLGFFAIDPGSIPTDGLSYLAEQLGVEAGEIAGYDFS SRTARRHCAEILIHLGYHRMKRVDRAQLTEWIAGELCPGGQSINAMLEHVFLWCRDRRIYGPSRKELERVVRSQRQDYLD TWLIGTSDRLSSDAVALLEASLADPDSSTGFNRMKGDAGQATLDNILDVTEKLAFIQRLDLPHDLLTATGKPWVDQIVRR VAGEKASEMRRHAPARQLGLYAIYLMSREAQLTDAMIDLLIETVHKIGTRSKRKVVGDIAKDIERVYGKERLLVEIASAS INEPSGRICDVIFPIAGKAKLAAIVKESHAKGALDRRIYKVMRGSWANHYRRMLPSLLSVLEFRSNNAVWRPVLAALDWI RSKVDGGCRFVPLQDVPIDEVIPARWRSSVIDDDGRVNRISYELCVLTQLRDRIRSKEIWVVGADRYRNPDDDLPKDFEI RRDAYYSGLSLTPDAQAFCASIREELERELLLLNANIPQNDKVRLLWRGDNRISITPFKPLPEPKGLASIKSEIGQRWPM TGLLDVLKEAALDTGLMDAFETSASRVTLSKAALAQRLLLCLYGLGTNAGLKRVAGATPDVSYEELLHVHRRFIHAPALR EACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVEKRATCVYSQLKRCSSSEVAS MIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAVARQKLALPQAGMRTRLSNLLPILSSPIDWDEIEQ QYDEMVKYAAAMQSRTADPEAILLRFARAEVMHPTYKALSELGRAVKTIFLCRYLRQEAFRREIHEGLNVVVFC
Specific function: Required for transposition of transposon Tn1546 [H]
COG id: COG4644
COG function: function code L; Transposase and inactivated derivatives, TnpA family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 7 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002513 [H]
Pfam domain/function: PF01526 Transposase_7 [H]
EC number: NA
Molecular weight: Translated: 98108; Mature: 98108
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRSIPGGDLIGRWSLSFADIDFVNSKPALTRLGLAAQLKFFASLGFFAIDPGSIPTDGL CCCCCCCCCCEEEEECCEECEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHH SYLAEQLGVEAGEIAGYDFSSRTARRHCAEILIHLGYHRMKRVDRAQLTEWIAGELCPGG HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC QSINAMLEHVFLWCRDRRIYGPSRKELERVVRSQRQDYLDTWLIGTSDRLSSDAVALLEA CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH SLADPDSSTGFNRMKGDAGQATLDNILDVTEKLAFIQRLDLPHDLLTATGKPWVDQIVRR HCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHH VAGEKASEMRRHAPARQLGLYAIYLMSREAQLTDAMIDLLIETVHKIGTRSKRKVVGDIA HHCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KDIERVYGKERLLVEIASASINEPSGRICDVIFPIAGKAKLAAIVKESHAKGALDRRIYK HHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH VMRGSWANHYRRMLPSLLSVLEFRSNNAVWRPVLAALDWIRSKVDGGCRFVPLQDVPIDE HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH VIPARWRSSVIDDDGRVNRISYELCVLTQLRDRIRSKEIWVVGADRYRNPDDDLPKDFEI HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH RRDAYYSGLSLTPDAQAFCASIREELERELLLLNANIPQNDKVRLLWRGDNRISITPFKP HHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEECCCEEEECCCCC LPEPKGLASIKSEIGQRWPMTGLLDVLKEAALDTGLMDAFETSASRVTLSKAALAQRLLL CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH CLYGLGTNAGLKRVAGATPDVSYEELLHVHRRFIHAPALREACARVANATLAIRNAAVWG HHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECCEEEC DAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVEKRATCVYSQLKRCSSSEVAS CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHCCHHHHHH MIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAVARQKLALPQAGMRT HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RLSNLLPILSSPIDWDEIEQQYDEMVKYAAAMQSRTADPEAILLRFARAEVMHPTYKALS HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHH ELGRAVKTIFLCRYLRQEAFRREIHEGLNVVVFC HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC >Mature Secondary Structure MDRSIPGGDLIGRWSLSFADIDFVNSKPALTRLGLAAQLKFFASLGFFAIDPGSIPTDGL CCCCCCCCCCEEEEECCEECEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHH SYLAEQLGVEAGEIAGYDFSSRTARRHCAEILIHLGYHRMKRVDRAQLTEWIAGELCPGG HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC QSINAMLEHVFLWCRDRRIYGPSRKELERVVRSQRQDYLDTWLIGTSDRLSSDAVALLEA CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH SLADPDSSTGFNRMKGDAGQATLDNILDVTEKLAFIQRLDLPHDLLTATGKPWVDQIVRR HCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHH VAGEKASEMRRHAPARQLGLYAIYLMSREAQLTDAMIDLLIETVHKIGTRSKRKVVGDIA HHCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KDIERVYGKERLLVEIASASINEPSGRICDVIFPIAGKAKLAAIVKESHAKGALDRRIYK HHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH VMRGSWANHYRRMLPSLLSVLEFRSNNAVWRPVLAALDWIRSKVDGGCRFVPLQDVPIDE HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH VIPARWRSSVIDDDGRVNRISYELCVLTQLRDRIRSKEIWVVGADRYRNPDDDLPKDFEI HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHH RRDAYYSGLSLTPDAQAFCASIREELERELLLLNANIPQNDKVRLLWRGDNRISITPFKP HHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEECCCEEEECCCCC LPEPKGLASIKSEIGQRWPMTGLLDVLKEAALDTGLMDAFETSASRVTLSKAALAQRLLL CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH CLYGLGTNAGLKRVAGATPDVSYEELLHVHRRFIHAPALREACARVANATLAIRNAAVWG HHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECCEEEC DAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVEKRATCVYSQLKRCSSSEVAS CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHCCHHHHHH MIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAVARQKLALPQAGMRT HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RLSNLLPILSSPIDWDEIEQQYDEMVKYAAAMQSRTADPEAILLRFARAEVMHPTYKALS HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHH ELGRAVKTIFLCRYLRQEAFRREIHEGLNVVVFC HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8380148 [H]