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The map label for this gene is xerD [H]

Identifier: 148550554

GI number: 148550554

Start: 1502

End: 2416

Strand: Direct

Name: xerD [H]

Synonym: Swit_5115

Alternate gene names: 148550554

Gene position: 1502-2416 (Clockwise)

Preceding gene: 148550553

Following gene: 148550558

Centisome position: 0.48

GC content: 68.31

Gene sequence:

>915_bases
TTGATCGCGGCGGCCGACGACGCCACGCGGCTGCGCTTCCTTGAGTTCTTCGCCGTCACCATCCGCAATCCGCATACGCG
CCGTGCCTATGCGCGCGCGGCGGGCGACTTCCTGGCCTGGTGCGAGGCGCGCGGCGTTGCCTCTCTCGCTGGCGTGCAAC
CGCTCCACGTCGCGGCCTGGGTCGAGGCGCTGGGGCGCGAGCTGGCCGCGCCCAGCGTCAAGCAGCAGCTCGCCGGCGTG
CGCCACCTGTTCGACTGGCTGGTAACGGGCCATATCGTGCCGGTGAATCCTGCCGGATCGGTGCGCGGGCCGGCGCATAG
CCAGCGGCGCGGCAAGACGCCGGTGCTCGCCCCCGACGAGGCGCGGCGGCTGCTCGATACCATCGACGTGACGACGCCGG
CGGGCCTGCGCGACCGCGCCCTGATTGGATTGATGGTCTATTCATTCGCACGGATCGGCGCGGCGCTCGCGATGCGGGTG
GAGGACGTGTTCGTGCAGAATCGCAGGCTTTGGGTGCGCCTGCACGAGAAGGGCGGCAAGCGCCATGAAATGCCCTGCCA
CCACAACCTTGAGCATTATCTCGCTGAATATCTCGACGGGTGCGAGTTGCGCGAAGACCGCAAAGGGCCGCTGTTCCGCA
CGATCGCGCGCGGCACTAAGCGCCTCAGCGATACCCCCCTGCCCCAAGCCAATGCGTTCGCGATGGTGCGCCGGCGCGCG
GGCGCGGCCGAGATCGGGACGGCGATCGGCAACCATTCGTTCCGCGCGACCGGGATCACCACCTATCTGAAAAACGGCGG
CACGTTGGAGACGGCCGCGACGATGGCAAACCACAGCTCGACGCGCACCACCCAGCTTTACGACCGGAGACCCGATGACG
TGACGCTGGACGAGGTGGAGCGGGTGTTGATCTAG

Upstream 100 bases:

>100_bases
GGGAGCTGGCGAAGCCCCGCCGCGAGCCGGCCCGCTGGCAGAAGATCGCACGATGAACCAGCTCGCCCTCCTACCCTCGC
CCGCGCTGGCGTTGCCGGCC

Downstream 100 bases:

>100_bases
GCGGCGATCGCCGGCGCACACGCCCAGCGGTCGCCATCCCAATGAAACCCTAGCCGCTGCGCGTTGCTGATCGCGGGCGG
CTCGCCCTTGCGCCAGAAGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MIAAADDATRLRFLEFFAVTIRNPHTRRAYARAAGDFLAWCEARGVASLAGVQPLHVAAWVEALGRELAAPSVKQQLAGV
RHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDEARRLLDTIDVTTPAGLRDRALIGLMVYSFARIGAALAMRV
EDVFVQNRRLWVRLHEKGGKRHEMPCHHNLEHYLAEYLDGCELREDRKGPLFRTIARGTKRLSDTPLPQANAFAMVRRRA
GAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVERVLI

Sequences:

>Translated_304_residues
MIAAADDATRLRFLEFFAVTIRNPHTRRAYARAAGDFLAWCEARGVASLAGVQPLHVAAWVEALGRELAAPSVKQQLAGV
RHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDEARRLLDTIDVTTPAGLRDRALIGLMVYSFARIGAALAMRV
EDVFVQNRRLWVRLHEKGGKRHEMPCHHNLEHYLAEYLDGCELREDRKGPLFRTIARGTKRLSDTPLPQANAFAMVRRRA
GAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVERVLI
>Mature_304_residues
MIAAADDATRLRFLEFFAVTIRNPHTRRAYARAAGDFLAWCEARGVASLAGVQPLHVAAWVEALGRELAAPSVKQQLAGV
RHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDEARRLLDTIDVTTPAGLRDRALIGLMVYSFARIGAALAMRV
EDVFVQNRRLWVRLHEKGGKRHEMPCHHNLEHYLAEYLDGCELREDRKGPLFRTIARGTKRLSDTPLPQANAFAMVRRRA
GAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVERVLI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=282, Percent_Identity=25.177304964539, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33636; Mature: 33636

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAAADDATRLRFLEFFAVTIRNPHTRRAYARAAGDFLAWCEARGVASLAGVQPLHVAAW
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHH
VEALGRELAAPSVKQQLAGVRHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHCCCCCCCCCHH
ARRLLDTIDVTTPAGLRDRALIGLMVYSFARIGAALAMRVEDVFVQNRRLWVRLHEKGGK
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
RHEMPCHHNLEHYLAEYLDGCELREDRKGPLFRTIARGTKRLSDTPLPQANAFAMVRRRA
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
GAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVE
CHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHH
RVLI
HHCC
>Mature Secondary Structure
MIAAADDATRLRFLEFFAVTIRNPHTRRAYARAAGDFLAWCEARGVASLAGVQPLHVAAW
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHH
VEALGRELAAPSVKQQLAGVRHLFDWLVTGHIVPVNPAGSVRGPAHSQRRGKTPVLAPDE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHCCCCCCCCCHH
ARRLLDTIDVTTPAGLRDRALIGLMVYSFARIGAALAMRVEDVFVQNRRLWVRLHEKGGK
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
RHEMPCHHNLEHYLAEYLDGCELREDRKGPLFRTIARGTKRLSDTPLPQANAFAMVRRRA
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
GAAEIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVE
CHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHH
RVLI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]