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The map label for this gene is csrA

Identifier: 148380695

GI number: 148380695

Start: 2888525

End: 2888743

Strand: Reverse

Name: csrA

Synonym: CBO2737

Alternate gene names: 148380695

Gene position: 2888743-2888525 (Counterclockwise)

Preceding gene: 148380696

Following gene: 148380694

Centisome position: 74.32

GC content: 25.11

Gene sequence:

>219_bases
ATGCTAGTTATAACTAGAAAAAAAGGAGAGTCCCTTTTAATAGGAGATGATATAGAGATAACTGTAGTTAAATTAGATGA
TGGTTCTGTAAAATTAGCCATAGATGCCCCTAAAAATTTAACTATACTAAGAAAAGAACTTTATAATGAAGTTCAAGAGG
AAAATAAAAAAGCTACTAATTTCAATCCTTCTATTTTAAAAAATATAAAAAGTAAATAA

Upstream 100 bases:

>100_bases
CTCCCATTATTATAAATATAAAAGAAAAAATAGGGGAACAAATAATAATAAATAGTGATAAATATAAAGTAAAACATTCA
CTATTTAAGGAGGAAGCTTA

Downstream 100 bases:

>100_bases
AAGGAAGTGTAATACATGGAAGTAAAAGCTATGAGTCAAGGAAGACATCAAGCGTATAATGCTGAAATCGTAAATAGTGG
TACAGATTTAGATAAAAATG

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MLVITRKKGESLLIGDDIEITVVKLDDGSVKLAIDAPKNLTILRKELYNEVQEENKKATNFNPSILKNIKSK

Sequences:

>Translated_72_residues
MLVITRKKGESLLIGDDIEITVVKLDDGSVKLAIDAPKNLTILRKELYNEVQEENKKATNFNPSILKNIKSK
>Mature_72_residues
MLVITRKKGESLLIGDDIEITVVKLDDGSVKLAIDAPKNLTILRKELYNEVQEENKKATNFNPSILKNIKSK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_CLOB1 (A7FWY7)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384979.1
- ProteinModelPortal:   A7FWY7
- SMR:   A7FWY7
- STRING:   A7FWY7
- GeneID:   5396436
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2678
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- BioCyc:   CBOT441770:CLB_2678-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8096; Mature: 8096

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVITRKKGESLLIGDDIEITVVKLDDGSVKLAIDAPKNLTILRKELYNEVQEENKKATN
CEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
FNPSILKNIKSK
CCHHHHHHCCCC
>Mature Secondary Structure
MLVITRKKGESLLIGDDIEITVVKLDDGSVKLAIDAPKNLTILRKELYNEVQEENKKATN
CEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC
FNPSILKNIKSK
CCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA