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The map label for this gene is yqfA [C]

Identifier: 148379555

GI number: 148379555

Start: 1720477

End: 1721127

Strand: Reverse

Name: yqfA [C]

Synonym: CBO1589

Alternate gene names: 148379555

Gene position: 1721127-1720477 (Counterclockwise)

Preceding gene: 148379558

Following gene: 148379544

Centisome position: 44.28

GC content: 29.8

Gene sequence:

>651_bases
ATGTTTAAAAAATTTAGAGATCCAGTAAGTGGTTTAACTCATTTGTTTGGAGCCATTATGTCTATAGTAGGGCTTATAGT
GTTGGTTAATTACTCAATATTTCAAGATAGCCCTTTGCACATTACAGTTTTTGCAATTTTTGGAGCAAGTTTAATATTAT
TATATAGTGCTAGCTCTATATATCATCTGGTAACAGCTTCTAAAAAATCTATTAGAATATTAAGGAGAATAGACCATTCA
ATGATTTATGTTTTGATTGCAGGTAGTTATACTCCTATTTGTTTATTGGCTTTAAAAGGAACCTTTGGATTAGCCATGTT
AACTATTATTTGGACTTTAGCTATTATTGGCATACTAGTTAAAAATTTTTGGTTTTCTGCTCCACGATGGATATCTACTG
GTTTTTATCTAATTATGGGGTGGCTTATAGTTGTTGCAATATTTCCATTATCTAAGACTCTTTCCATTGGAGGTTTATTT
TGGTTAATAGCTGGTGGAGTTGCTTATTCTATAGGTGCAGTAATTTATGGCACAAAACGACCTAAAATTGCTAGTAAATA
TTTTACTTTCCATGATATTTTTCATATATTTGTACTTCTAGGTAGCTTATGTCATTTTATACTTATGTTAAATTACATAA
TGTATATGTAG

Upstream 100 bases:

>100_bases
TGAAAAATTTTATATTTAGTATTAGAATGATAATAATACAACACATAGTTTTAAAAACTACATATCATTATATTAATGCA
TTTTAGAGAGGATGATTTTT

Downstream 100 bases:

>100_bases
AAAAAGGATAACCACTAAGGCTATCCTTTTATATTATTTATATTTTCTCTTTGTAACAAAAAATCATCCCTTAAGTAAAT
TTTAACCATTTTATTAATGG

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQDSPLHITVFAIFGASLILLYSASSIYHLVTASKKSIRILRRIDHS
MIYVLIAGSYTPICLLALKGTFGLAMLTIIWTLAIIGILVKNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLF
WLIAGGVAYSIGAVIYGTKRPKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM

Sequences:

>Translated_216_residues
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQDSPLHITVFAIFGASLILLYSASSIYHLVTASKKSIRILRRIDHS
MIYVLIAGSYTPICLLALKGTFGLAMLTIIWTLAIIGILVKNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLF
WLIAGGVAYSIGAVIYGTKRPKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM
>Mature_216_residues
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQDSPLHITVFAIFGASLILLYSASSIYHLVTASKKSIRILRRIDHS
MIYVLIAGSYTPICLLALKGTFGLAMLTIIWTLAIIGILVKNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLF
WLIAGGVAYSIGAVIYGTKRPKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=215, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1789266, Length=209, Percent_Identity=35.8851674641148, Blast_Score=119, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71996356, Length=167, Percent_Identity=32.3353293413174, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24189; Mature: 24189

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQDSPLHITVFAIFGASLILLYSASSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHH
YHLVTASKKSIRILRRIDHSMIYVLIAGSYTPICLLALKGTFGLAMLTIIWTLAIIGILV
HHHHHCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLFWLIAGGVAYSIGAVIYGTKR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
PKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQDSPLHITVFAIFGASLILLYSASSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHH
YHLVTASKKSIRILRRIDHSMIYVLIAGSYTPICLLALKGTFGLAMLTIIWTLAIIGILV
HHHHHCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLFWLIAGGVAYSIGAVIYGTKR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
PKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]