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The map label for this gene is ylmH [H]

Identifier: 148379440

GI number: 148379440

Start: 1599801

End: 1600571

Strand: Direct

Name: ylmH [H]

Synonym: CBO1468

Alternate gene names: 148379440

Gene position: 1599801-1600571 (Clockwise)

Preceding gene: 148379439

Following gene: 148379441

Centisome position: 41.16

GC content: 25.42

Gene sequence:

>771_bases
ATGGACAAAGAAAAATTTTTAAATAAGGTAAATATAGAAGATAAGAGTTTATTGTTAGATATATATAATAAAGCTATTTT
GGCAGAAAAAACAGGAAAACAATTATTTTCATCTTATTTTTGTACTAATAACATATGCAAAGCTTCTTGTGAATTGGCCC
ACTTTTTAAATTTAAAAATAGATATCGCTGGAGTTTTTAAAGATGCAGAAAGACAAATTATAGGATTTAATGTTTATGAT
ATTGAAGATTTTCCAGTAGTTCTAGCTAAAATAAGTTATAATTCTAAATTTGTAAATCTAGAACATAAGGATTTTTTAGG
TGCTTTAACATCCTTAGGGATAAAGAGAGAAAAAATGGGAGATTTAGTTTTAAAACAAAATAATTGTTACGTACCTATTT
ATGATGACTTATATGAATATATAAATATGAATTTAAATCATATAGCTAAGGCACCCTGTAGAATAGAAAAGATGGATTTA
AAAACTCAGGTAATTCCTGAGTTTAATTTTCAAGAAAAGTCTATTATTGTTTCTTCTAATAGAGCAGATTCTATAGTGGC
ATCTCTATGTAACATTTCAAGAACTAAGGCTCTGGATTTCATAGGATCTTCAAAAGTATTTGTGGATTATGATGAAGTTA
AATCTAAAAACAAAGAAATATGCATAGGATCTATAGTAACTATAAGAGGATATGGTAAATTTAAAATGGATTCTTTTATA
GGAGAAACAGCTAAGGGAAGAATTAAAATATTATTTAAAAAATTTATTTGA

Upstream 100 bases:

>100_bases
AATAGCCCCTAATTTGATGATAGATTTTTCACCTATATTTGCTTTTATTTTATTAGATGTTTTAAGAAATTTAGTTTTTG
TTATTTTAGGAATGTTCTAA

Downstream 100 bases:

>100_bases
TTTGAGGTGTGTTCTATGAAGATAACATCAATGGATATTACGAATAAGCAATTCAAAAAATCCATGCGAGGATATAATTG
TGATGAAGTAGATGAATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDKEKFLNKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASCELAHFLNLKIDIAGVFKDAERQIIGFNVYD
IEDFPVVLAKISYNSKFVNLEHKDFLGALTSLGIKREKMGDLVLKQNNCYVPIYDDLYEYINMNLNHIAKAPCRIEKMDL
KTQVIPEFNFQEKSIIVSSNRADSIVASLCNISRTKALDFIGSSKVFVDYDEVKSKNKEICIGSIVTIRGYGKFKMDSFI
GETAKGRIKILFKKFI

Sequences:

>Translated_256_residues
MDKEKFLNKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASCELAHFLNLKIDIAGVFKDAERQIIGFNVYD
IEDFPVVLAKISYNSKFVNLEHKDFLGALTSLGIKREKMGDLVLKQNNCYVPIYDDLYEYINMNLNHIAKAPCRIEKMDL
KTQVIPEFNFQEKSIIVSSNRADSIVASLCNISRTKALDFIGSSKVFVDYDEVKSKNKEICIGSIVTIRGYGKFKMDSFI
GETAKGRIKILFKKFI
>Mature_256_residues
MDKEKFLNKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASCELAHFLNLKIDIAGVFKDAERQIIGFNVYD
IEDFPVVLAKISYNSKFVNLEHKDFLGALTSLGIKREKMGDLVLKQNNCYVPIYDDLYEYINMNLNHIAKAPCRIEKMDL
KTQVIPEFNFQEKSIIVSSNRADSIVASLCNISRTKALDFIGSSKVFVDYDEVKSKNKEICIGSIVTIRGYGKFKMDSFI
GETAKGRIKILFKKFI

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29197; Mature: 29197

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKEKFLNKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASCELAHFLNLKI
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEE
DIAGVFKDAERQIIGFNVYDIEDFPVVLAKISYNSKFVNLEHKDFLGALTSLGIKREKMG
EEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCEEEECCHHHHHHHHHHCCCCHHHHC
DLVLKQNNCYVPIYDDLYEYINMNLNHIAKAPCRIEKMDLKTQVIPEFNFQEKSIIVSSN
CEEEECCCCEEEEHHHHHHHHCCCHHHHHCCCCEEEEECCCEEECCCCCCCCCEEEEECC
RADSIVASLCNISRTKALDFIGSSKVFVDYDEVKSKNKEICIGSIVTIRGYGKFKMDSFI
CHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHHHCCCCCEEEEEEEEEECCCCEEHHHHH
GETAKGRIKILFKKFI
CCCCCCCEEEEEECCC
>Mature Secondary Structure
MDKEKFLNKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASCELAHFLNLKI
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEE
DIAGVFKDAERQIIGFNVYDIEDFPVVLAKISYNSKFVNLEHKDFLGALTSLGIKREKMG
EEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCEEEECCHHHHHHHHHHCCCCHHHHC
DLVLKQNNCYVPIYDDLYEYINMNLNHIAKAPCRIEKMDLKTQVIPEFNFQEKSIIVSSN
CEEEECCCCEEEEHHHHHHHHCCCHHHHHCCCCEEEEECCCEEECCCCCCCCCEEEEECC
RADSIVASLCNISRTKALDFIGSSKVFVDYDEVKSKNKEICIGSIVTIRGYGKFKMDSFI
CHHHHHHHHHCCHHHHHHHHCCCCEEEEEHHHHHCCCCCEEEEEEEEEECCCCEEHHHHH
GETAKGRIKILFKKFI
CCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]