Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 148379437

GI number: 148379437

Start: 1598364

End: 1599035

Strand: Direct

Name: yggS [C]

Synonym: CBO1465

Alternate gene names: 148379437

Gene position: 1598364-1599035 (Clockwise)

Preceding gene: 148379436

Following gene: 148379438

Centisome position: 41.12

GC content: 27.98

Gene sequence:

>672_bases
TTGGAAATAGAAGACAATATTAATAGCATAAAAAAAAGTTTACCAAAAGATGTAACTCTTATAGGGGTATCCAAAACTAA
ACCAGTAGAATATATAGAGGAAGCATATGAGGCTGGATTGAGAGACTTTGGAGAAAATAAGGTGCAAGAGCTTATAGATA
AAATAGAGTATTTTAAAGAAAAAAAAGATATAAGATGGCATTTAATAGGGCACCTTCAAAGAAATAAGGTAAAGTATATA
GTAGGAAAAGTTTATTTAATACATTCTTTAGATAGCATTAGACTTTTAGAAGAAATAGAAGATAAATATAAAAAACAAAA
TAAGATAGCAAATGTACTAATTCAGATAAATATAGGAAAAGAAGAAAGCAAATATGGCATATACAAAGAAGAGTTAGGAA
ATATGATAGATGCTATAGAAAAATGTGAAAATGTGAAAGCTAAGGGGCTTATGACCATAATACCTAAAGGATCTGATGAG
GAATGTGCTAAATATTTTAGACAAATGAAAGAAATCTTTTCAGCATTACAAAATAAAAGCTTTAAAAATATAGAGGTTAA
CTACTTATCTATGGGAATGACAGGAGATTACCCTATTGCTATAAAAGAAGGCTCTAATATGATAAGAGTAGGACAAGGAA
TTTTTGGGAAAAGAAATTATGATATAAAGTAA

Upstream 100 bases:

>100_bases
AAAAATAATTAGTTTAAAAGTGTTTAATTCTGAAGGACTTTTAGATTTTATAGAGAATATTATAAAGTAAATAATAATTA
GGCTGTAAGGGGGCATAACT

Downstream 100 bases:

>100_bases
TTATTAAGGAGGTAAACATTATGTCAGGTAAAATATTAGATAAAATGGCTGGACTTTTAGGCCTAGAGGATGATTTAGAA
GAGGATTTAGAAGAGGTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MEIEDNINSIKKSLPKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKEKKDIRWHLIGHLQRNKVKYI
VGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDE
ECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNYDIK

Sequences:

>Translated_223_residues
MEIEDNINSIKKSLPKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKEKKDIRWHLIGHLQRNKVKYI
VGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDE
ECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNYDIK
>Mature_223_residues
MEIEDNINSIKKSLPKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKEKKDIRWHLIGHLQRNKVKYI
VGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDE
ECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNYDIK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=228, Percent_Identity=34.2105263157895, Blast_Score=124, Evalue=5e-29,
Organism=Escherichia coli, GI1789321, Length=214, Percent_Identity=39.7196261682243, Blast_Score=155, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=33.4862385321101, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=209, Percent_Identity=36.3636363636364, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI45550861, Length=221, Percent_Identity=35.7466063348416, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25809; Mature: 25809

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIEDNINSIKKSLPKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKE
CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
EESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMKEIFSALQNKS
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
FKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNYDIK
CCCEEEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MEIEDNINSIKKSLPKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKE
CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECC
EESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMKEIFSALQNKS
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
FKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNYDIK
CCCEEEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]