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The map label for this gene is ytrP [H]

Identifier: 148379344

GI number: 148379344

Start: 1492472

End: 1493020

Strand: Direct

Name: ytrP [H]

Synonym: CBO1366

Alternate gene names: 148379344

Gene position: 1492472-1493020 (Clockwise)

Preceding gene: 148379343

Following gene: 148379345

Centisome position: 38.4

GC content: 25.14

Gene sequence:

>549_bases
ATGAGTTATGAGTACATGACCAGGGAACAATTAATAGTTGAACTAAAAAAGAAAGATAAGATAATTGAAAATATTGTACG
TTGTGCAAGTATAGATTCTCTTACATCAGTGCTTAATAGAAAAAGAGGATTAGAAGATTTATATAGAGAAATAGAATTAG
CTAAAATTAATAAAGAAAAACTTACTATAGGATTTGCAGATGTAAACAATTTGAAATGTATAAATGACAATTATGGTCAT
ATTACAGGGGATTATGTATTAATAACTTTATGCAATATAATAAAGGATAATATAAGGAAAAGTGATTTTATATTTAGATA
CGGTGGAGATGAATTTATAATTGTACTACCTAAAACTAATATAAAAGAAAGTAGTATAGTATGGAATAGGATAAGTGATA
AAATAAAAAAAGTAAGTAAAAATTTTAAGTATGAAGTAGGAATGAGTTGTGGTTTTGTAGAGTATGATGAATATTACAAT
GAATCTCTTAAAGAGTTGATAAAAATGGCAGATTTTAAAATGTATGAGAGTAAAAGCAAAATAGGGTAG

Upstream 100 bases:

>100_bases
ATTATTGTTTATTTAACAGCGTTAAAAATATATGTTTGTTTAAAAAAATGATTTTGCCCTAATGTTATAAAATATGTTTA
AGGAGTACAGGTGGTTATTT

Downstream 100 bases:

>100_bases
TAATTAAAATATTTTGTATATATTATTATACAAAATATTTTAATTTATTAAAGAAACCTCTGCTACAATAAGAATAATAT
TAGTAATGGTTATTATGTAG

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSYEYMTREQLIVELKKKDKIIENIVRCASIDSLTSVLNRKRGLEDLYREIELAKINKEKLTIGFADVNNLKCINDNYGH
ITGDYVLITLCNIIKDNIRKSDFIFRYGGDEFIIVLPKTNIKESSIVWNRISDKIKKVSKNFKYEVGMSCGFVEYDEYYN
ESLKELIKMADFKMYESKSKIG

Sequences:

>Translated_182_residues
MSYEYMTREQLIVELKKKDKIIENIVRCASIDSLTSVLNRKRGLEDLYREIELAKINKEKLTIGFADVNNLKCINDNYGH
ITGDYVLITLCNIIKDNIRKSDFIFRYGGDEFIIVLPKTNIKESSIVWNRISDKIKKVSKNFKYEVGMSCGFVEYDEYYN
ESLKELIKMADFKMYESKSKIG
>Mature_181_residues
SYEYMTREQLIVELKKKDKIIENIVRCASIDSLTSVLNRKRGLEDLYREIELAKINKEKLTIGFADVNNLKCINDNYGHI
TGDYVLITLCNIIKDNIRKSDFIFRYGGDEFIIVLPKTNIKESSIVWNRISDKIKKVSKNFKYEVGMSCGFVEYDEYYNE
SLKELIKMADFKMYESKSKIG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=28.4883720930233, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=29.7752808988764, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=31.6770186335404, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=27.3255813953488, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI87082007, Length=151, Percent_Identity=27.8145695364238, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=23.8888888888889, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=155, Percent_Identity=29.6774193548387, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=30.379746835443, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 21303; Mature: 21172

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYEYMTREQLIVELKKKDKIIENIVRCASIDSLTSVLNRKRGLEDLYREIELAKINKEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHEECCCC
LTIGFADVNNLKCINDNYGHITGDYVLITLCNIIKDNIRKSDFIFRYGGDEFIIVLPKTN
EEEEEECCCCEEEECCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCC
IKESSIVWNRISDKIKKVSKNFKYEVGMSCGFVEYDEYYNESLKELIKMADFKMYESKSK
CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
IG
CC
>Mature Secondary Structure 
SYEYMTREQLIVELKKKDKIIENIVRCASIDSLTSVLNRKRGLEDLYREIELAKINKEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHEECCCC
LTIGFADVNNLKCINDNYGHITGDYVLITLCNIIKDNIRKSDFIFRYGGDEFIIVLPKTN
EEEEEECCCCEEEECCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCC
IKESSIVWNRISDKIKKVSKNFKYEVGMSCGFVEYDEYYNESLKELIKMADFKMYESKSK
CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
IG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]