Click here to switch to the map view.

The map label for this gene is ydaK [H]

Identifier: 148379276

GI number: 148379276

Start: 1409708

End: 1410553

Strand: Direct

Name: ydaK [H]

Synonym: CBO1295

Alternate gene names: 148379276

Gene position: 1409708-1410553 (Clockwise)

Preceding gene: 148379275

Following gene: 148379277

Centisome position: 36.27

GC content: 24.7

Gene sequence:

>846_bases
ATGGATAGATTTTCTAAAAATATAGATATATGCATAATTCTTTTGTTATTGAACTTTTTTTGTATATGTAGTTTTATATA
TTTTAATTTAGGAAAAAATATTATGTTAAATTTTATAATGTTAGGTTCCTTATTTATGGTGACAATAGTGGCTTATTTCA
GAGGTATAGTTGAAGGTTTTTTATTTAGTGCTATGATTATATTTTTTTATGGTACTTTTATAATTTATAATAATACAATT
CATAGAAACCCGGTAGAACTTATTACTTATATCTGGATGGTAGACATACCTTTAGGTGCTTTTATATCCGGAAAACTATC
TGAAAATATAAATCTAATTCAAAGTATAAATACAAGGCTACAAAAGGAATATAGAGATTTAATAACTATTGATAAAACTA
CTGGTCTTAGCAATTTAAAAGGATTTTATATAGATTTGGATAGGGAAATGAGTAAAGCCAAAAGGCATGAATTGAATCTA
TCTCTTATGATAGTAAAAATACAGTATTATGATGAACTTAACGCTATTTTAGGAGAGAAAAAAATGGAAGAAATTTTAAA
GATTATCAGCAATGTTATAACCTTAGCAATTAGGGGAGAAGATATTAGCTATAAATTAAATAAAAATACTCTTGCAATAC
TTATGCCTAGTACAAATCTTCAAGGTGCTGAGGTGGTAAAAAACAGAATAAAGGAAAGTATTAGTGAAAAAAACCTGAAA
ATAAAACAAGAAGATAAAAATGTTAATATTGATATAAAAGTAGGAATAGTAGAATATAAAAATACTATAAAAGAAGCTTT
TGAGTTTAAAGAATTAGCAGAAAAGGAATTAGAATACGATGTATAA

Upstream 100 bases:

>100_bases
TAAGCCAATATTATGTTATAATATATGGAAAATATGGTAAATAAATATTATTTAAAAATATGAATAAATAATAAGTTTTT
TCCTGGAGGGAAATAAATAT

Downstream 100 bases:

>100_bases
GAAAATAACTATTTACTTTATGATATTTTTTTTACTATTCACAAATGCAAATTGTAAAGTTAAAGCAGCAGATAGTGATA
AAAAAGAAAAAGTTTTAATA

Product: GGDEF domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MDRFSKNIDICIILLLLNFFCICSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGFLFSAMIIFFYGTFIIYNNTI
HRNPVELITYIWMVDIPLGAFISGKLSENINLIQSINTRLQKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHELNL
SLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKNTLAILMPSTNLQGAEVVKNRIKESISEKNLK
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV

Sequences:

>Translated_281_residues
MDRFSKNIDICIILLLLNFFCICSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGFLFSAMIIFFYGTFIIYNNTI
HRNPVELITYIWMVDIPLGAFISGKLSENINLIQSINTRLQKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHELNL
SLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKNTLAILMPSTNLQGAEVVKNRIKESISEKNLK
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV
>Mature_281_residues
MDRFSKNIDICIILLLLNFFCICSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGFLFSAMIIFFYGTFIIYNNTI
HRNPVELITYIWMVDIPLGAFISGKLSENINLIQSINTRLQKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHELNL
SLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKNTLAILMPSTNLQGAEVVKNRIKESISEKNLK
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 32583; Mature: 32583

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFSKNIDICIILLLLNFFCICSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSAMIIFFYGTFIIYNNTIHRNPVELITYIWMVDIPLGAFISGKLSENINLIQSINTRL
HHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHCCHHHHHHHHHHH
QKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHELNLSLMIVKIQYYDELNAILGEK
HHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHCHH
KMEEILKIISNVITLAIRGEDISYKLNKNTLAILMPSTNLQGAEVVKNRIKESISEKNLK
HHHHHHHHHHHHHEEEEECCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV
EEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDRFSKNIDICIILLLLNFFCICSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSAMIIFFYGTFIIYNNTIHRNPVELITYIWMVDIPLGAFISGKLSENINLIQSINTRL
HHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHCCHHHHHHHHHHH
QKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHELNLSLMIVKIQYYDELNAILGEK
HHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHCHH
KMEEILKIISNVITLAIRGEDISYKLNKNTLAILMPSTNLQGAEVVKNRIKESISEKNLK
HHHHHHHHHHHHHEEEEECCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV
EEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]