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The map label for this gene is rpsA [H]

Identifier: 148379145

GI number: 148379145

Start: 1272664

End: 1273809

Strand: Direct

Name: rpsA [H]

Synonym: CBO1159

Alternate gene names: 148379145

Gene position: 1272664-1273809 (Clockwise)

Preceding gene: 148379144

Following gene: 148379146

Centisome position: 32.74

GC content: 28.71

Gene sequence:

>1146_bases
ATGAAGGATATGATGGAAGAAATAAATTCTTCAATGAAAAGAATTCATAAAGGAGAACTATTAAAAGGAAAAGTAATTTC
AGTTTCAGATAAAGAAGCCGTGTTAAATATAGGATATATATCTGATGGAATATTACCTAAAAAAGAAGTTGTAGATAATG
AAGAGGTAAATCTTAAAGACATAATAAGTAAAGATGATGTAATTTCTGTTTGTGTACTAGAGGTAAATGATGGTGAAGGA
AATGTACTTTTATCTAAGAAAAAAGCAGAAATTATAGAAGCTTGGTCAAAGCTAGAAAAAGCTTTTAAAAATGAAGAAAT
ACTAGAAATCAAAGTAGAAGAAATAATAAAGGGAGGAGCTATAGGCCATATACAAGGTATAAGAGTATTTATACCAGCTT
CTCAAATAGATAATAAATATGTTAAAGATTTAAATGTATTTAAAGGTGAAATGGTAAAAGGAAGATTAATAGAATTAGAT
AAACAAAAGAGAAAAATAGTTTTATCTAGCAGAGTAGTAAAAGAAGAAGAAGAGGCGAAAAGAAAAGAAGAACTATTGAA
TAGTTTAGAAAAGGGACAAAAAATAGAAGGTGTTGTAAGAAGACTAGAAAAGTTTGGAGCTTTTGTGGATATAGGTGGAA
TGGATGGATTAGTTCATAATTCTCAGCTATCCTGGGGAAGGGTAAATCATCCTTCAGAAGTAGTATCTATAGGAGACAAA
GTAGAGGTCTATGTTTTAGATTTTGATAAGGATACTAAAAAAATAGCTTTATCTTTAAAGGATGTTAAGAAGGATCCTTG
GAATACAGTAAAGGATAAATATGCCGTAGGTAGTGTGATAGAAGGAACAATAGTTAAATTATTAAACTTTGGAGCCTTTG
TAGAAGTGGAAAATGGTATAGAAGGATTAGTTCATATATCAGAAATAACTGATGAACATATAGCTAAACCATCAGAAAAG
TTAAATATAGGCGATAAAGTTAAAGTAAAAGTATTAGAAGTAAATTCAGATGAAAAGAGAATGTCATTAAGCATAAAAGA
AGCAACAGAAAAGCCAAAGGAAGATTTCTCAAAATATGATGATTCTAAAGAAGAAGATGTAACTTTAGGAGATTTATTTG
GAGATAAGTTTAAAGATTTATTTTAA

Upstream 100 bases:

>100_bases
TTATATATGTATATGTTTTAAATTATGATAAAATTATATTAATTGTATTAGTATAAAAAGAAAAGTAAGGGGTTGTTTTT
TTATGTCAGAAGAAATAACA

Downstream 100 bases:

>100_bases
TATACAAATTATCACTTTAATTTAAGCGATATGCATTACTAAAACACTTATATAATAGGTTTTAGTAATGCTATTTATAT
AGTTACTCAATGAATGCTAT

Product: 30S ribosomal protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEVNDGEG
NVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELD
KQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVVSIGDK
VEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEK
LNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF

Sequences:

>Translated_381_residues
MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEVNDGEG
NVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELD
KQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVVSIGDK
VEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEK
LNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF
>Mature_381_residues
MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKDIISKDDVISVCVLEVNDGEG
NVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELD
KQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVVSIGDK
VEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEK
LNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYDDSKEEDVTLGDLFGDKFKDLF

Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]

COG id: COG0539

COG function: function code J; Ribosomal protein S1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 S1 motif domains [H]

Homologues:

Organism=Homo sapiens, GI70980549, Length=264, Percent_Identity=28.4090909090909, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1787140, Length=353, Percent_Identity=37.1104815864023, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI145693187, Length=76, Percent_Identity=50, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082262, Length=78, Percent_Identity=48.7179487179487, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6323885, Length=210, Percent_Identity=29.5238095238095, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: 16,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003451
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR000110
- InterPro:   IPR022967 [H]

Pfam domain/function: PF02401 LYTB; PF00575 S1 [H]

EC number: =1.17.1.2 [H]

Molecular weight: Translated: 42808; Mature: 42808

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKD
CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCHHH
IISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGA
HCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCC
IGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELDKQKRKIVLSSRVVKEEEEAK
EEEECCEEEEEEHHHHCHHHHHHHHHHHCCCCCCHHEECCHHHHHHHHHHHHHHHHHHHH
RKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVVSIGDK
HHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHHHCCCCE
VEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGI
EEEEEEECCCCCHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
EGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYD
CCEEEHHHHHHHHHCCCHHHCCCCCEEEEEEEEECCCCHHHEEEHHHHHCCCHHHHHHCC
DSKEEDVTLGDLFGDKFKDLF
CCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKD
CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCHHH
IISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILEIKVEEIIKGGA
HCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCC
IGHIQGIRVFIPASQIDNKYVKDLNVFKGEMVKGRLIELDKQKRKIVLSSRVVKEEEEAK
EEEECCEEEEEEHHHHCHHHHHHHHHHHCCCCCCHHEECCHHHHHHHHHHHHHHHHHHHH
RKEELLNSLEKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVVSIGDK
HHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHHHCCCCE
VEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGI
EEEEEEECCCCCHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
EGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSKYD
CCEEEHHHHHHHHHCCCHHHCCCCCEEEEEEEEECCCCHHHEEEHHHHHCCCHHHHHHCC
DSKEEDVTLGDLFGDKFKDLF
CCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]