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The map label for this gene is pchR [H]

Identifier: 148379040

GI number: 148379040

Start: 1150577

End: 1151584

Strand: Direct

Name: pchR [H]

Synonym: CBO1049

Alternate gene names: 148379040

Gene position: 1150577-1151584 (Clockwise)

Preceding gene: 148379039

Following gene: 148379041

Centisome position: 29.6

GC content: 30.65

Gene sequence:

>1008_bases
ATGGGGATGGAATTGTGTACAGCTAAACAATATGAAATAAAAAGTTCAAAAGCTAATGATTGTTGCATTTGTGATGGCTT
TAATAAAATCTACAACAAAGGCTGTGGGCAATATAGTTACCCAATTCCCCAGGAGCTAGGAAGTGGACATTTAAAACAAT
TATTAAGTTGTGAAAATGCTCGTATTATGGAATTTGATATTAATTTGTTGAAACAAGTGGAACTTAATGGAACTTCAAGA
ATACCTCACATAGACATGCTTTTTTGTCTTGGTGATGATTTGCAATGGGATTTACCCCAAACAGGTAAAAAATTTGAGAT
GCTGTCTGGTGAAAGCTATATGGGTACTAGTGAAGAAACTATAAAAAGATGCATTTATCCTGCAAAGTGTGATATTAGGT
TAATTGAAATTAAAATGCCTTTGAAGAAAATGAAAGATACTATTGATAAAATTTGTGAAGAATGCAGTTCTTGTAGACAT
TTTTCAAATGAAGTATGGGCTGATAATTTAAAAATAACACCTTCTATTAATGTAATTTTGAATCAGATGCTAAAATGTCC
CTATGAAGAATCCTTAAGATATTTATATATGGAAGGAAAGCTTATGGAACTTGTGGCTGTATATTTAAATGAGGTTATGT
ATCAGAGTAAAGGAATTTCAAAGAGTATAAGTTTATCTAAAGATGATGTTAAAAGTATTTATAAAGCAAAGGACATACTA
GATAAAAGCATTACTCAGAAAATCACATTAAGTTATCTTTCAAAGGAAGTTTGTCTTAATGAATTTAAACTAAAAAAAGG
ATTCAAAGAAGTGTTCGGGATGCCTGTATACACTTACCTTTTAGATAAACGATTGGAACTTGCTAAGTTTTTTTTAGAGG
AGAAACAACTACGTGTTAGTGATGTGGCTAACCTTGTTGGTTATGGAAATATGAGCCATTTTGCAGCAGCTTTCAGAAAA
AAATATGGAGTAAATCCTAGTGAATATATCAAAGATATTTCAAAATAA

Upstream 100 bases:

>100_bases
TTTCAGTATCATAGTTACTTAGATAAAATATTAGTAGAAAACTTTATTTTAATATTTTATCTAGTAAAGAAATTTAGGTA
TATCAATTAAGAAGGGAGTA

Downstream 100 bases:

>100_bases
ATTATTAAATTTTACTGCATACATGCTATTGTATTGCAGTATTTTTTTGTGTGAAAATCCTAATTTGAGCGAATATAATA
CCGATTTGAGTAGAGATGAG

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MGMELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARIMEFDINLLKQVELNGTSR
IPHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRH
FSNEVWADNLKITPSINVILNQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDIL
DKSITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDVANLVGYGNMSHFAAAFRK
KYGVNPSEYIKDISK

Sequences:

>Translated_335_residues
MGMELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARIMEFDINLLKQVELNGTSR
IPHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRH
FSNEVWADNLKITPSINVILNQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDIL
DKSITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDVANLVGYGNMSHFAAAFRK
KYGVNPSEYIKDISK
>Mature_334_residues
GMELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARIMEFDINLLKQVELNGTSRI
PHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHF
SNEVWADNLKITPSINVILNQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDILD
KSITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDVANLVGYGNMSHFAAAFRKK
YGVNPSEYIKDISK

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38494; Mature: 38363

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENA
CCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCCHHHCCHHHHHHHCCCCC
RIMEFDINLLKQVELNGTSRIPHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEET
EEEEECHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHH
IKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFSNEVWADNLKITPSINVIL
HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEECCHHHHHH
NQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDIL
HHHHCCCHHHHHHEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
DKSITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVANLVGYGNMSHFAAAFRKKYGVNPSEYIKDISK
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
GMELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENA
CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCCHHHCCHHHHHHHCCCCC
RIMEFDINLLKQVELNGTSRIPHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEET
EEEEECHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHH
IKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFSNEVWADNLKITPSINVIL
HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEECCHHHHHH
NQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDIL
HHHHCCCHHHHHHEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
DKSITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVANLVGYGNMSHFAAAFRKKYGVNPSEYIKDISK
HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]