Click here to switch to the map view.

The map label for this gene is rhaS [H]

Identifier: 148378566

GI number: 148378566

Start: 664468

End: 665337

Strand: Reverse

Name: rhaS [H]

Synonym: CBO0564

Alternate gene names: 148378566

Gene position: 665337-664468 (Counterclockwise)

Preceding gene: 148378573

Following gene: 148378558

Centisome position: 17.12

GC content: 24.71

Gene sequence:

>870_bases
ATGAACATAAAAAGCTCTTCATCAAACATAAAAAGAGGATATTTAAAAGAAGATTTTAGATTCTTTCATCTAAAAGATAA
AAAAGATATGGAATTTGAGCTTCATTATCATGACTTTAACAAAATAATTGTTTTTATGTCTGGTAATGTTAGTTATCTAA
TAGAAGGAAAAGCTTATAAACTGAAACCCTGGGATATACTTTTTGTAAGCAGTAATGATCTACATAAAGTTATAATAAAC
AATGATGAACCCTATGAAAGGATAATAATATGGGTTAATTCAAAGTTTTTAGAAATGCATAATAGAAATAATAACAACTT
GCTTACTTGCTTTCAATTATCTTCTAAGCATAAAATTAATCTTTTCCGTATGGAAGAACATAATATATCCTTAATAAAAC
ATACTTTATTTTCTCTCGAATCTGCTACAAAGGATAGAGAATTTGGCAATATTGTATTAAAAAATTCTTTATTCATTCAG
TTAATGGTATATCTAAATAGATTATTTATGAACAGTAATAACCATATAGGCAAAAAAGATATAGAATATGATAAGCAAAT
AGAAGAAATTATAAATTATATAAAGGAAAATCTTCAAGAGGACCTGTCTATAGATACTTTATCCTCTAAATTTTTTATAA
ATAAATATTATCTTATGCACAAATTTAAATCTCAAACTGGTTATACTCTTCATAAATATATACAACAAAAACGTTTAGCT
TTTTCCAAGTCTCTTATAATAAAAGGATATAAGATTACAGAAATATATCTAAAATGTGGATTTGGAGACTATTCAAGCTT
CATACGTGCATTTAAAAAAGCCTATGGTATATCCCCTAAGGATTACTATAAAAACTTTAAGAATTATTAG

Upstream 100 bases:

>100_bases
ATATATGTAATTTTTACTATTTTTATTGTTAAAACTGCTATTAATATTGCAAAAAATGCTATAATGTATATATATACAGA
TTTTTAAGGAAGGGATAATA

Downstream 100 bases:

>100_bases
ATCTAAAATTTCATAGATCTATCAATAAACATAAATATATAAATTTCAATTAATGCTTATATACTTATACAAATTAGTTT
TTGCTTTATAATTTTTATAC

Product: AraC family transcription regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNIKSSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIIN
NDEPYERIIIWVNSKFLEMHNRNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLESATKDREFGNIVLKNSLFIQ
LMVYLNRLFMNSNNHIGKKDIEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
FSKSLIIKGYKITEIYLKCGFGDYSSFIRAFKKAYGISPKDYYKNFKNY

Sequences:

>Translated_289_residues
MNIKSSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIIN
NDEPYERIIIWVNSKFLEMHNRNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLESATKDREFGNIVLKNSLFIQ
LMVYLNRLFMNSNNHIGKKDIEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
FSKSLIIKGYKITEIYLKCGFGDYSSFIRAFKKAYGISPKDYYKNFKNY
>Mature_289_residues
MNIKSSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIIN
NDEPYERIIIWVNSKFLEMHNRNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLESATKDREFGNIVLKNSLFIQ
LMVYLNRLFMNSNNHIGKKDIEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
FSKSLIIKGYKITEIYLKCGFGDYSSFIRAFKKAYGISPKDYYKNFKNY

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=254, Percent_Identity=19.2913385826772, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34656; Mature: 34656

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYK
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCEEEEEECCEEE
LKPWDILFVSSNDLHKVIINNDEPYERIIIWVNSKFLEMHNRNNNNLLTCFQLSSKHKIN
ECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCEEEEECCCCCCCEEEEEEECCCCEEE
LFRMEEHNISLIKHTLFSLESATKDREFGNIVLKNSLFIQLMVYLNRLFMNSNNHIGKKD
EEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCC
IEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
CHHHHHHHHHHHHHHHHHHHHCCEEHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FSKSLIIKGYKITEIYLKCGFGDYSSFIRAFKKAYGISPKDYYKNFKNY
HHHHHEEECEEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MNIKSSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYK
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCEEEEEECCEEE
LKPWDILFVSSNDLHKVIINNDEPYERIIIWVNSKFLEMHNRNNNNLLTCFQLSSKHKIN
ECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCEEEEECCCCCCCEEEEEEECCCCEEE
LFRMEEHNISLIKHTLFSLESATKDREFGNIVLKNSLFIQLMVYLNRLFMNSNNHIGKKD
EEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCC
IEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
CHHHHHHHHHHHHHHHHHHHHCCEEHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FSKSLIIKGYKITEIYLKCGFGDYSSFIRAFKKAYGISPKDYYKNFKNY
HHHHHEEECEEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA