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The map label for this gene is asnC [H]

Identifier: 148378528

GI number: 148378528

Start: 621121

End: 621585

Strand: Reverse

Name: asnC [H]

Synonym: CBO0526

Alternate gene names: 148378528

Gene position: 621585-621121 (Counterclockwise)

Preceding gene: 148378534

Following gene: 148378526

Centisome position: 15.99

GC content: 26.88

Gene sequence:

>465_bases
ATGGATTTAAATATAGATGGTTTAGATGAACTAGATTTACAAATACTTGAAATTTTAATTAAAGATTCTAGAACCCCCTT
TTTAGAAATAGCTAGAAAATGTCATGTTAGTGGCGGTACTATACATGTTAGAATGAAAAAAATGCATGACATAGGCATAA
TAAAAGGTACAAAACTTATAATAGATAATTCTAAACTTGGCTATGACGTTTGCTGTTTCATAGGAATTTATTTAGATAAA
GCCTCTTACTTTAATTCCGTATTAAAAGAATTAAACGAAATTAAAGAAATAACAGAGCTCCATTATACAACAGGCCAATA
TTCTATATTTGTAAAAGTAATATGTAAAAGTATAACTCATTTACAGGATTTATTAATGAATAAAATACAAAGGGTTGAAG
GAATACAAAGAACGGATACATTCATTTCCTTATCCCAACTAATAGACAGAAACATAAACATATAA

Upstream 100 bases:

>100_bases
TTTTAACAAATTCATAATTTTTTCTGGTATAATATTTATAATGTAATAAGATAAAAGTATATGTGTTCAATTAAACTAAC
CATAACTTGGAGGTGCTCAG

Downstream 100 bases:

>100_bases
TAAGGAAATTACGACTTAAAAGGAAGTTATACTACCCGTGGTTTAAAAAAGAGATATGTGGCTAGAAAAACAACTCACTT
CAATAAGAGATTCTAATTTG

Product: transcription regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MDLNIDGLDELDLQILEILIKDSRTPFLEIARKCHVSGGTIHVRMKKMHDIGIIKGTKLIIDNSKLGYDVCCFIGIYLDK
ASYFNSVLKELNEIKEITELHYTTGQYSIFVKVICKSITHLQDLLMNKIQRVEGIQRTDTFISLSQLIDRNINI

Sequences:

>Translated_154_residues
MDLNIDGLDELDLQILEILIKDSRTPFLEIARKCHVSGGTIHVRMKKMHDIGIIKGTKLIIDNSKLGYDVCCFIGIYLDK
ASYFNSVLKELNEIKEITELHYTTGQYSIFVKVICKSITHLQDLLMNKIQRVEGIQRTDTFISLSQLIDRNINI
>Mature_154_residues
MDLNIDGLDELDLQILEILIKDSRTPFLEIARKCHVSGGTIHVRMKKMHDIGIIKGTKLIIDNSKLGYDVCCFIGIYLDK
ASYFNSVLKELNEIKEITELHYTTGQYSIFVKVICKSITHLQDLLMNKIQRVEGIQRTDTFISLSQLIDRNINI

Specific function: Activator of asnA transcription [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=145, Percent_Identity=49.6551724137931, Blast_Score=144, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17671; Mature: 17671

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNIDGLDELDLQILEILIKDSRTPFLEIARKCHVSGGTIHVRMKKMHDIGIIKGTKLI
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEHHHCCCEECCCEEE
IDNSKLGYDVCCFIGIYLDKASYFNSVLKELNEIKEITELHYTTGQYSIFVKVICKSITH
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LQDLLMNKIQRVEGIQRTDTFISLSQLIDRNINI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLNIDGLDELDLQILEILIKDSRTPFLEIARKCHVSGGTIHVRMKKMHDIGIIKGTKLI
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEHHHCCCEECCCEEE
IDNSKLGYDVCCFIGIYLDKASYFNSVLKELNEIKEITELHYTTGQYSIFVKVICKSITH
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LQDLLMNKIQRVEGIQRTDTFISLSQLIDRNINI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]