| Definition | Clostridium botulinum A str. ATCC 3502, complete genome. |
|---|---|
| Accession | NC_009495 |
| Length | 3,886,916 |
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The map label for this gene is yrvJ [H]
Identifier: 148378507
GI number: 148378507
Start: 593867
End: 596023
Strand: Reverse
Name: yrvJ [H]
Synonym: CBO0504
Alternate gene names: 148378507
Gene position: 596023-593867 (Counterclockwise)
Preceding gene: 148378515
Following gene: 148378504
Centisome position: 15.33
GC content: 32.31
Gene sequence:
>2157_bases TTGAATAAATCAAGAAAGGCTTTTGCTACTTGTGCCGTATCCGCTACCCTATTAGGCCAAAATTTTTTATTTTCCCAAAA TGTTCTAGCCGTTAGTGATAGCATGTACCCTAATGTTAATAGTAATGCTTATAATTCTAACAATATATTTACTCAATGCG GATTCAAAGGACAATGTACTTGGTTTACCTATGGAAGAGTTTTAGAAAAATTAAACATGAAACTTCCAAGTCAATTTTAT GGTAATGCTATAGATTGGTGGTATTCTAACATTAAATCCAATACATTCTCCTATGGTTCGGAACCTCAAGCTAATTCTAT AGTAGTTTGGAGTGGAGGCTCAAAAGGATATGGACATGTTGGTTTTGTAGAAAAAGTTGTAGGAGATACTATTTATTACA ATGAAGGAAATGTTGAAAAAAGAGGCTATTATGATGGTTATGTAAAAACCATATCTAAACAAGCCATAAAAAATAGAGGT AACTTATTTTTAAAGGGATATATCTATTTAAATGGTAGTTCAAATAGCTCTAATAGTAATAATGACTATACTATAATAAA AACATCTAAGGTTTCTTGTTCAAGCCTTAATGTCAGAAGCAATCCTTCTCTATCATCAGCGGTTATAGGTGGTGTTTCGA AAAATCAAACCCTTTCTGTTATCAGTGAAAGTAATGGATGGTCAAAAATAAAATATGGTTCTGGAGTTGGTTATGTAAGT TCTAAATATCTATATGATGAAAATAATACTATCAATTCTGGTAATGGTGGTTCTTCTAGTAATGAAAGTGTACAACCAGG TTTTGTTAAACTATCTAATAGTAGTTCAGTATTAAATGTTAGAAGTTCAGCTAATTTATCCTCTAATATAATAGGTTCTC TTAAACATGGATCATCTGTATCAATATTAGGTAAAACCGGTTCTTGGTATAAAATTAAATATGGTTCTAAAACTGCTTAT GTAAGTTCAAGTTATATTTCATCAAGCAACGATTCTAACTCTAGTTCTAATACTAGTTCTAATACCTCAACTAGTAAAGG TACTGTAAAATTATCTAGTACAAGCTCTTCATTAAACCTTAGAGAGAATCCAAGTCTATCCTCTAAAGTATTAGGTGGAC TTTCACATGGTTCTTCTGTTGATATACTAGATAAAACTGGTTCTTGGTATAAAGTTAAATATGGTTCTAAAATTGGTTAT GTCAGCAGCCAATTTATAACTACTTCCAACTCTTCAAATAATAGCGGATCTTCCGTAACAGACAAAAGATTTGGAACTGT ATATCTATCCGACAAATATTCTACTTTAAATGTACGAAAAAATGCTGGAACAAATAGCAGTGTAATTTCATCATTAGCCT ATGGAAGTAAAGTAGAAATACTATCTTCTAGCGGTGAGTGGTATAAAATTAACTTTAAAAATACTACAGGTTATGTGTAT AGCAAATACATAAAAGATACAACTCAAAAAGTTGTGGCGTTTAATCAAATTGCTACACAAGATAAAAAGTATGGAGTTAA AGAAAATAATGTTACTGTAGATAATAAGAGCGCTGAAGTAGTAAAGTCTAATACAGAAAATGAAAAAAAATTAGTTGCAA TAAAGTCAGAAAAAGAACAAGAAAGAGAAAAATCATCTGAGCCTGTACAGACAAAAGTAACTGAAGAAACCCAAAGAAAA GAAGCTGAAGAATCCCAAAGAAAAGCGGCTGAAGAGGCTCAAAGAAAAGAAGCTGAAGAAGCTCAAAGAAAAGAAGCTGA AGCTGAGGCTTCCGAATCTCAACAAAAAGAACAAAGCAATGTATCAGAAAAAGCACCAGCAACACATGGAGACGTAATAT CATATGCTAGACAATATCTAGGTACTCCTTATGTCTATGGAGGAACTTCACCAAGTGGATTTGACTGCTCAGGCTTTGTA CAATATGTGTATAAAAATGCAGCGGGTATATCATTACCAAGAACTACTTATGATCAAATTGGAGTAGGTTCTCGAGTTTC ACAAGATCAATTACAACCTGGTGATTTAGTATTCCCAGATACAGGTCATGTAGGCATATATATAGGTGGAGGACAAATGA TACACGCTTCAAAACCAGGTGATGTAGTAAAAATTTCATCAGTATGGGCATTTTATGCAGGAGTAAGAATAAAATAA
Upstream 100 bases:
>100_bases TAAAACTTTTGTTATTTCTTCTCTGTGGTATAATAAAATTGTTAGAATTAACGATAAATATTAATAAATACTTATTTTAA ATATGAAGGGAGGATTTTCT
Downstream 100 bases:
>100_bases CTAACAAACTTTTATATAAACAGATTTTAGTATGAATAAAAGGCCTACCCGCAAAATAATTGCTGGGGGCCTTTCCTGCT TTTGCTTACTTCTTAATTGG
Product: peptidoglycan hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MNKSRKAFATCAVSATLLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCTWFTYGRVLEKLNMKLPSQFY GNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHVGFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRG NLFLKGYIYLNGSSNSSNSNNDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSVSILGKTGSWYKIKYGSKTAY VSSSYISSSNDSNSSSNTSSNTSTSKGTVKLSSTSSSLNLRENPSLSSKVLGGLSHGSSVDILDKTGSWYKVKYGSKIGY VSSQFITTSNSSNNSGSSVTDKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKVTEETQRK EAEESQRKAAEEAQRKEAEEAQRKEAEAEASESQQKEQSNVSEKAPATHGDVISYARQYLGTPYVYGGTSPSGFDCSGFV QYVYKNAAGISLPRTTYDQIGVGSRVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK
Sequences:
>Translated_718_residues MNKSRKAFATCAVSATLLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCTWFTYGRVLEKLNMKLPSQFY GNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHVGFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRG NLFLKGYIYLNGSSNSSNSNNDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSVSILGKTGSWYKIKYGSKTAY VSSSYISSSNDSNSSSNTSSNTSTSKGTVKLSSTSSSLNLRENPSLSSKVLGGLSHGSSVDILDKTGSWYKVKYGSKIGY VSSQFITTSNSSNNSGSSVTDKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKVTEETQRK EAEESQRKAAEEAQRKEAEEAQRKEAEAEASESQQKEQSNVSEKAPATHGDVISYARQYLGTPYVYGGTSPSGFDCSGFV QYVYKNAAGISLPRTTYDQIGVGSRVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK >Mature_718_residues MNKSRKAFATCAVSATLLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCTWFTYGRVLEKLNMKLPSQFY GNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHVGFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRG NLFLKGYIYLNGSSNSSNSNNDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSVSILGKTGSWYKIKYGSKTAY VSSSYISSSNDSNSSSNTSSNTSTSKGTVKLSSTSSSLNLRENPSLSSKVLGGLSHGSSVDILDKTGSWYKVKYGSKIGY VSSQFITTSNSSNNSGSSVTDKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKVTEETQRK EAEESQRKAAEEAQRKEAEEAQRKEAEAEASESQQKEQSNVSEKAPATHGDVISYARQYLGTPYVYGGTSPSGFDCSGFV QYVYKNAAGISLPRTTYDQIGVGSRVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK
Specific function: Probably involved in cell-wall metabolism [H]
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788501, Length=127, Percent_Identity=38.5826771653543, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1787944, Length=113, Percent_Identity=38.0530973451327, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788001, Length=96, Percent_Identity=43.75, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1786421, Length=105, Percent_Identity=38.0952380952381, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002508 - InterPro: IPR017293 - InterPro: IPR003646 - InterPro: IPR013247 [H]
Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 77878; Mature: 77878
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS50911 CHAP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKSRKAFATCAVSATLLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCT CCCCCCCHHHHHHHHHHHCCCCEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEE WFTYGRVLEKLNMKLPSQFYGNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHV EEHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCH GFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRGNLFLKGYIYLNGSSNSSNSN HHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC NDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS CCEEEEEECCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCCCCEE SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSV CEEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHEEEECCCCEE SILGKTGSWYKIKYGSKTAYVSSSYISSSNDSNSSSNTSSNTSTSKGTVKLSSTSSSLNL EEEECCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEE RENPSLSSKVLGGLSHGSSVDILDKTGSWYKVKYGSKIGYVSSQFITTSNSSNNSGSSVT CCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEECCEECCEEEEEEEECCCCCCCCCCCC DKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY CCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCHHH SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQ HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEECCCCCHHEECCCCCCEEEEEEECHHHH EREKSSEPVQTKVTEETQRKEAEESQRKAAEEAQRKEAEEAQRKEAEAEASESQQKEQSN HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VSEKAPATHGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQI CHHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHC GVGSRVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK CCCCCCCHHCCCCCCEECCCCCCEEEEECCCEEEECCCCCCEEEEEEEEEEECCCEEC >Mature Secondary Structure MNKSRKAFATCAVSATLLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCT CCCCCCCHHHHHHHHHHHCCCCEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEE WFTYGRVLEKLNMKLPSQFYGNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHV EEHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCH GFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRGNLFLKGYIYLNGSSNSSNSN HHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC NDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS CCEEEEEECCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCCCCEE SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSV CEEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHEEEECCCCEE SILGKTGSWYKIKYGSKTAYVSSSYISSSNDSNSSSNTSSNTSTSKGTVKLSSTSSSLNL EEEECCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEE RENPSLSSKVLGGLSHGSSVDILDKTGSWYKVKYGSKIGYVSSQFITTSNSSNNSGSSVT CCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEECCEECCEEEEEEEECCCCCCCCCCCC DKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY CCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCHHH SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQ HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEECCCCCHHEECCCCCCEEEEEEECHHHH EREKSSEPVQTKVTEETQRKEAEESQRKAAEEAQRKEAEEAQRKEAEAEASESQQKEQSN HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VSEKAPATHGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQI CHHHCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHC GVGSRVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK CCCCCCCHHCCCCCCEECCCCCCEEEEECCCEEEECCCCCCEEEEEEEEEEECCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]