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The map label for this gene is ssb [H]

Identifier: 148361028

GI number: 148361028

Start: 450337

End: 450816

Strand: Reverse

Name: ssb [H]

Synonym: LPC_2988

Alternate gene names: 148361028

Gene position: 450816-450337 (Counterclockwise)

Preceding gene: 148361027

Following gene: 148358514

Centisome position: 12.61

GC content: 39.38

Gene sequence:

>480_bases
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAATGGTGCCACTAATTACGATGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Upstream 100 bases:

>100_bases
CTACTATTTACCAATAACACCTTCTCTTTGGGCTGCTACGAAATAACTGCCAAATTATGTATAATACCTAACTAACTTTC
GCATACAGGAGATGATTTCA

Downstream 100 bases:

>100_bases
ATGATTCAAATAAAAGCCCGCGTTAATGCGGGCTCAAAATATAAATTATAGTTATTAATCTAAAATTTACTCTTCTGTAT
CATCACTGCTTACAGGCCTA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGNGATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Sequences:

>Translated_159_residues
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGNGATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF
>Mature_158_residues
ARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVEG
SLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGNGATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=115, Percent_Identity=34.7826086956522, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1790494, Length=180, Percent_Identity=47.2222222222222, Blast_Score=167, Evalue=2e-43,
Organism=Drosophila melanogaster, GI85725234, Length=111, Percent_Identity=36.9369369369369, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24647376, Length=111, Percent_Identity=36.9369369369369, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17641; Mature: 17509

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCF
CCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
NRLGEIAGEYIRKGSKLYVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGNGATNYD
HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
DMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCF
CCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
NRLGEIAGEYIRKGSKLYVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGNGATNYD
HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
DMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]