Click here to switch to the map view.

The map label for this gene is 148361005

Identifier: 148361005

GI number: 148361005

Start: 473927

End: 475147

Strand: Reverse

Name: 148361005

Synonym: LPC_2965

Alternate gene names: NA

Gene position: 475147-473927 (Counterclockwise)

Preceding gene: 148361004

Following gene: 148361006

Centisome position: 13.29

GC content: 38.74

Gene sequence:

>1221_bases
ATGTCTGATTTTCCTATTTTTTCTGTCTTGGGGATTGAAATAGAATATATGCTGGTGGATAAAGAGAGTTTAAATGTCCA
ACCTAAAAGCGATCTTATTCTAAGGACTTTGGCAGGCCATCAGGTTAATGAAATAGAATTAGGAGACATTGCGATAAGCA
ATGAATTAGTATTGCATGTCCTTGAGTTAAAAAATAATGGTCCCAAACCACTACATGTTCCAGTAGCTGAACATTTCCAG
AAAACCATTAGAGAGCTCCAGCCCCTTCTTGCTCAACACAATTTATTGCTATTACCTACTGGCGCTCATCCCTGGATGGA
CCCAAATACTGAAACAATTCGCTGGCCTCATGGTAACCATGATATCTATAATCAATTTAATTCAATTTTCAATTGCCAGG
GACATGGCTGGGCAAACTTGCAAAGTATGCATGTCAACCTGCCTTATTCCAATGAAGAAGAATTTTGTCAATTGCATAAC
GCCATACGCTTGATTTTACCTTTATTACCCGCCATTGCGGCAAGTACTCCATTCCTTGATGGCCAAGCTACAGGATTACT
GGATTCCCGCTTGTACTTTTATAGCCGCAATCAGCAACGCATTCCCTCCATCAGCGGCGATATTATTCCTGAGTTTATTA
GAACAGAAAGAGAATATCAGGAACAAATTCTCGAACCCATGTATCGAGACATTAGCCCATATGATCCCAAAGGGATATTA
CAATATCAATGGCTAAATTCTCGTGCTGCAATTCCCAAGTTTGACATGAAGGCTATTGAAATTCGCATTCTTGACAGCCA
GGAATGTGTAGAAGCAGACATTGCCATAGCAAAAGCAATCAATGCCATTTTAAAATACTGGCAAAGCACCTCGAATTTTT
ATCTTGATAATCCATGCGACACCAAGAGTTTAAAATACGTTTTTGATGAAACCATAAAAAACGGATTAAGTTGTCATATC
GATAACAAAAAATTACTGGAGCAATGGCAATTACCCCTTCAAGGGATGTCAGTCAATACCATCTGGTCACTATTGATCGA
AAGAATTAGTCATGAACTGGATAGGAAGCAGCAACTGGCTCTGGAACTTATTTTAAAACAGGGAAATTTGAGTGAAAGAA
TCCTCAAGGCTTGTAGCTCCAGTATCAATCATGATTCTTTAAAACAAGTGTATACGCAATTAGCACATTGTTTGCTTCGT
AATGAACAATTTACCCCCTGA

Upstream 100 bases:

>100_bases
CCCAATATTGATCATGGCCTTGAAGATAAAATACTAGGCCAAAATCTATATGAGCAGATCATGAGTGTCTTCTTACAACG
AATTCGCAGGAAACATGGTT

Downstream 100 bases:

>100_bases
TATAATGAAAAATATAGCCCTTTTAATCAGTTGTGAACATGCTGTCAATACAGTTCCCTATGAATATCAAACCCTGTTTG
AACCTCATAAAGACGTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MSDFPIFSVLGIEIEYMLVDKESLNVQPKSDLILRTLAGHQVNEIELGDIAISNELVLHVLELKNNGPKPLHVPVAEHFQ
KTIRELQPLLAQHNLLLLPTGAHPWMDPNTETIRWPHGNHDIYNQFNSIFNCQGHGWANLQSMHVNLPYSNEEEFCQLHN
AIRLILPLLPAIAASTPFLDGQATGLLDSRLYFYSRNQQRIPSISGDIIPEFIRTEREYQEQILEPMYRDISPYDPKGIL
QYQWLNSRAAIPKFDMKAIEIRILDSQECVEADIAIAKAINAILKYWQSTSNFYLDNPCDTKSLKYVFDETIKNGLSCHI
DNKKLLEQWQLPLQGMSVNTIWSLLIERISHELDRKQQLALELILKQGNLSERILKACSSSINHDSLKQVYTQLAHCLLR
NEQFTP

Sequences:

>Translated_406_residues
MSDFPIFSVLGIEIEYMLVDKESLNVQPKSDLILRTLAGHQVNEIELGDIAISNELVLHVLELKNNGPKPLHVPVAEHFQ
KTIRELQPLLAQHNLLLLPTGAHPWMDPNTETIRWPHGNHDIYNQFNSIFNCQGHGWANLQSMHVNLPYSNEEEFCQLHN
AIRLILPLLPAIAASTPFLDGQATGLLDSRLYFYSRNQQRIPSISGDIIPEFIRTEREYQEQILEPMYRDISPYDPKGIL
QYQWLNSRAAIPKFDMKAIEIRILDSQECVEADIAIAKAINAILKYWQSTSNFYLDNPCDTKSLKYVFDETIKNGLSCHI
DNKKLLEQWQLPLQGMSVNTIWSLLIERISHELDRKQQLALELILKQGNLSERILKACSSSINHDSLKQVYTQLAHCLLR
NEQFTP
>Mature_405_residues
SDFPIFSVLGIEIEYMLVDKESLNVQPKSDLILRTLAGHQVNEIELGDIAISNELVLHVLELKNNGPKPLHVPVAEHFQK
TIRELQPLLAQHNLLLLPTGAHPWMDPNTETIRWPHGNHDIYNQFNSIFNCQGHGWANLQSMHVNLPYSNEEEFCQLHNA
IRLILPLLPAIAASTPFLDGQATGLLDSRLYFYSRNQQRIPSISGDIIPEFIRTEREYQEQILEPMYRDISPYDPKGILQ
YQWLNSRAAIPKFDMKAIEIRILDSQECVEADIAIAKAINAILKYWQSTSNFYLDNPCDTKSLKYVFDETIKNGLSCHID
NKKLLEQWQLPLQGMSVNTIWSLLIERISHELDRKQQLALELILKQGNLSERILKACSSSINHDSLKQVYTQLAHCLLRN
EQFTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 46651; Mature: 46520

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFPIFSVLGIEIEYMLVDKESLNVQPKSDLILRTLAGHQVNEIELGDIAISNELVLHV
CCCCCEEEEECEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCEEECCHHHHHH
LELKNNGPKPLHVPVAEHFQKTIRELQPLLAQHNLLLLPTGAHPWMDPNTETIRWPHGNH
HHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEECCCCCC
DIYNQFNSIFNCQGHGWANLQSMHVNLPYSNEEEFCQLHNAIRLILPLLPAIAASTPFLD
HHHHHHHHHEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GQATGLLDSRLYFYSRNQQRIPSISGDIIPEFIRTEREYQEQILEPMYRDISPYDPKGIL
CCCCCHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
QYQWLNSRAAIPKFDMKAIEIRILDSQECVEADIAIAKAINAILKYWQSTSNFYLDNPCD
EEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
TKSLKYVFDETIKNGLSCHIDNKKLLEQWQLPLQGMSVNTIWSLLIERISHELDRKQQLA
CHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LELILKQGNLSERILKACSSSINHDSLKQVYTQLAHCLLRNEQFTP
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDFPIFSVLGIEIEYMLVDKESLNVQPKSDLILRTLAGHQVNEIELGDIAISNELVLHV
CCCCEEEEECEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCEEECCHHHHHH
LELKNNGPKPLHVPVAEHFQKTIRELQPLLAQHNLLLLPTGAHPWMDPNTETIRWPHGNH
HHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEECCCCCC
DIYNQFNSIFNCQGHGWANLQSMHVNLPYSNEEEFCQLHNAIRLILPLLPAIAASTPFLD
HHHHHHHHHEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GQATGLLDSRLYFYSRNQQRIPSISGDIIPEFIRTEREYQEQILEPMYRDISPYDPKGIL
CCCCCHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
QYQWLNSRAAIPKFDMKAIEIRILDSQECVEADIAIAKAINAILKYWQSTSNFYLDNPCD
EEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
TKSLKYVFDETIKNGLSCHIDNKKLLEQWQLPLQGMSVNTIWSLLIERISHELDRKQQLA
CHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LELILKQGNLSERILKACSSSINHDSLKQVYTQLAHCLLRNEQFTP
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]