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The map label for this gene is rimM

Identifier: 148360985

GI number: 148360985

Start: 491694

End: 492203

Strand: Reverse

Name: rimM

Synonym: LPC_2945

Alternate gene names: 148360985

Gene position: 492203-491694 (Counterclockwise)

Preceding gene: 148360984

Following gene: 148360986

Centisome position: 13.76

GC content: 39.41

Gene sequence:

>510_bases
GTGAATAACAAGACAAATTGGGTTATCATCGGCCGTTTTGGCCGACCCCATGGTATTAAAGGCTTTGTCACGGTACATTC
CTTCACAGACCCTGCTGATAATATCTTGCGGTACAATGACTGGCACGTTTTTTTAAATAAACAGTGGCAGCCCCTTAAGT
TATTGACAATAGAAGTAAGAAGTAAAGCGATTATTGCTCAAATTGAAGGGTACCCAGAGCGTGAATTAGTCTCTGCATTA
ACCAATTTAGATATTGGTGTGCAAGAATCACAGCTTGCAGCTTTGGCACCAGGTGAGTATTACTGGTATCAACTGATTGG
CATGAGTGTCATAAACTCCAAAGGCGATCTTTTTGGAAAAGTTGTTGAAATCATGCCTACTGGCTCGAATGATGTACTTG
TTGTGGAAGGTGAAAAAAGACATTTAATTCCCTATCTTCCAGGACAATTTGTAATCAATATTGATGAAAGCCAGCAAGTA
ATCACTGTTGATTGGGATATGAATTTTTAG

Upstream 100 bases:

>100_bases
AAATGACCCACTGGCAAAAAGTTGGGGCCCAGTTATCCGATCGAGTCAGTGCCTTGTTAAAAGAACATAGCAAAAAATCA
GAGACAGCTGCTTAACCAAA

Downstream 100 bases:

>100_bases
TGGCATTACATCTTGGAGTCATCACCCTGTTGCCTGAAATAATACAAGGCATCCATTATGGGGTAACCGGCCGAGCTATT
GAACAAGGCTTGGTTAAAAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQIEGYPERELVSAL
TNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINIDESQQV
ITVDWDMNF

Sequences:

>Translated_169_residues
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQIEGYPERELVSAL
TNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINIDESQQV
ITVDWDMNF
>Mature_169_residues
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQIEGYPERELVSAL
TNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINIDESQQV
ITVDWDMNF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=37.2781065088757, Blast_Score=125, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_LEGPA (Q5X7Z0)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_122803.1
- ProteinModelPortal:   Q5X7Z0
- SMR:   Q5X7Z0
- STRING:   Q5X7Z0
- GeneID:   3117513
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp0465
- LegioList:   lpp0465
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   CLSK832153
- BioCyc:   LPNE297246:LPP0465-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19244; Mature: 19244

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHCEEECCEEEEECCCCCCEEEEEEEEC
SKAIIAQIEGYPERELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGK
CEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEHHEECCCCCCCEE
VVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINIDESQQVITVDWDMNF
EEEEEECCCCCEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEEECCC
>Mature Secondary Structure
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHCEEECCEEEEECCCCCCEEEEEEEEC
SKAIIAQIEGYPERELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGK
CEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEHHEECCCCCCCEE
VVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINIDESQQVITVDWDMNF
EEEEEECCCCCEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA