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The map label for this gene is 148360869

Identifier: 148360869

GI number: 148360869

Start: 606809

End: 607741

Strand: Direct

Name: 148360869

Synonym: LPC_2829

Alternate gene names: NA

Gene position: 606809-607741 (Clockwise)

Preceding gene: 148360870

Following gene: 148360868

Centisome position: 16.97

GC content: 36.66

Gene sequence:

>933_bases
ATGGACAATTTATTGAATGAAAAAAAATTAACAATTTTTACATCTAATGAAATCCAAGATAATTTAAACCGGGTTCTGAA
AAACTATGAACAAAATGGCATTATTGGACTTAATGGATATCTCAATCAGGCAAACCGAATAAGTTTGCTTAATGAACTTG
AGATAATACAAAAGGATGCTGAGCAGGATATTGTCAGGTATTGGAATAATAAAATCATTCATTTTTATTCCAAAGATCCT
TTGAAACCTGAGTCAGTGGATAGAGAATATGTCACAGAACCTTATTTTCAAGCTTCAAGTAATAAGGCACATGTATTTTA
TGAAGTGATTGATAATATGCGGGTAGTCAATCGAATTGGCCATGGTATGCATCTCATCAATAGGTATCCGATGATGCAGC
GAGCAGTTTATGATAGTCCTGTACTTCTGGATTTGCTAAAAGGGATTGGATTTAAGAAGCCAATCTGCCATCTCAGTGTC
TATATTCCCAAATATCCTAATGGAATAGGCAGTGAGGTAAAACCTCATCAGGAGTCAACATTTGCCTTTACTGAACCACA
AAGTGTCGTTGTTCTGTGGGTCGCCCTGGAAGACGCGTTAATTGAGAATGCCTGTATGTATGGGGTTTTAGGAAGTAATC
ATTGGCCATTGAAATGGGTATCAAAAGTGGACCGAGAGACAAAAACGCGTCACTTTGAGCAAGTTCATCAGTTACATATC
CCTGATTTTATGACAGAGCGCGAATTTTATACTGCCTTGGAAGTGAAAGCCGGAGATGCTTTGTTATTTCACGGTAATTT
TGTGCACTGCAGCCCAATGAATACGTCTAAAAACTCAAGAAAAGCATTGTCGTTTCAGTTTATTGAAACGTATGAAGTCG
ATTATCCGGAAACTAATTGGTTATACCCTCCTAACAAAGTGTATTTATATTAA

Upstream 100 bases:

>100_bases
AAACCAGATTCCCCATATATATTAAGCCTGCAAGCAGACGGTAATTTATTTCCTAGCATTTTACAATCAAATTTAGCCAT
GACATTGGTTTGGAGTTGTT

Downstream 100 bases:

>100_bases
AAATTAAATTTGATAAGCGATTGAGGAATCACTACATGTCTATGTATGATAAGCGCCAGTTTTTTAAAACCTATTTTTCT
AGCGCAAGCGAGAAGTCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDNLLNEKKLTIFTSNEIQDNLNRVLKNYEQNGIIGLNGYLNQANRISLLNELEIIQKDAEQDIVRYWNNKIIHFYSKDP
LKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSPVLLDLLKGIGFKKPICHLSV
YIPKYPNGIGSEVKPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
PDFMTEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY

Sequences:

>Translated_310_residues
MDNLLNEKKLTIFTSNEIQDNLNRVLKNYEQNGIIGLNGYLNQANRISLLNELEIIQKDAEQDIVRYWNNKIIHFYSKDP
LKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSPVLLDLLKGIGFKKPICHLSV
YIPKYPNGIGSEVKPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
PDFMTEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY
>Mature_310_residues
MDNLLNEKKLTIFTSNEIQDNLNRVLKNYEQNGIIGLNGYLNQANRISLLNELEIIQKDAEQDIVRYWNNKIIHFYSKDP
LKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSPVLLDLLKGIGFKKPICHLSV
YIPKYPNGIGSEVKPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
PDFMTEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI154937350, Length=292, Percent_Identity=27.0547945205479, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI154937352, Length=292, Percent_Identity=26.027397260274, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17544346, Length=232, Percent_Identity=27.5862068965517, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI161078170, Length=296, Percent_Identity=30.4054054054054, Blast_Score=114, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36198; Mature: 36198

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLLNEKKLTIFTSNEIQDNLNRVLKNYEQNGIIGLNGYLNQANRISLLNELEIIQKDA
CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECHHCCCCHHHHHHHHHHHHHHHH
EQDIVRYWNNKIIHFYSKDPLKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIG
HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
HGMHLINRYPMMQRAVYDSPVLLDLLKGIGFKKPICHLSVYIPKYPNGIGSEVKPHQEST
CHHHHHHHCHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
FAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
EEEECCCCEEEEEEEHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDFMTEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNW
CCHHHHHHHHEEEEEECCCEEEEECCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCC
LYPPNKVYLY
CCCCCEEEEC
>Mature Secondary Structure
MDNLLNEKKLTIFTSNEIQDNLNRVLKNYEQNGIIGLNGYLNQANRISLLNELEIIQKDA
CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECHHCCCCHHHHHHHHHHHHHHHH
EQDIVRYWNNKIIHFYSKDPLKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIG
HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
HGMHLINRYPMMQRAVYDSPVLLDLLKGIGFKKPICHLSVYIPKYPNGIGSEVKPHQEST
CHHHHHHHCHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
FAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
EEEECCCCEEEEEEEHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDFMTEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNW
CCHHHHHHHHEEEEEECCCEEEEECCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCC
LYPPNKVYLY
CCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA