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The map label for this gene is intD [H]

Identifier: 148360858

GI number: 148360858

Start: 615234

End: 616457

Strand: Direct

Name: intD [H]

Synonym: LPC_2818

Alternate gene names: 148360858

Gene position: 615234-616457 (Clockwise)

Preceding gene: 148360859

Following gene: 148360857

Centisome position: 17.2

GC content: 38.64

Gene sequence:

>1224_bases
ATGAAAGCAAAAATCAATAACACGCTTATTAAAAAACTGCTTCCTAGAGATAAAGAATACGAAGTTCATGATCTTGATCT
AAAAGGATTCATGATAAGAGTTTTTCCATCAGGAACCATGCGTTACGTCTGCCAGTACAAAAGAGGCAAAAAAATTAATC
TTGGAACAGTCGGTGTTATGACAGCAGCTCAAGCTCGTGAAAAGGCTATTGAAGTGCTAAGTAATGCCAATAAGGGGATT
GAGCCAACCGCACAAAAAGGGATAAATAAGCCTAAGACACTTCAAGAATTTATTGAGAGTGATTATAAGCCATGGGTTTT
ATCAACGCATAAACGAGGTCAAGAAACGCTAGCAGGGCTTATTAGATGTTATAAGGCTTTTTTTTCAAAGCCGTTGGGTG
AAATTACGCCTGCTCTTGTAGAACAATGGCGCGTTAAACGTCTTAATGAAGGCACTTCTCAGGCAACCTTAAATCGTAAT
ATATCCATGCTGAAATCACTGATGACCAAGGCAGTTGAATGGGGCTTTTTAAAAGAAAATGCACTTGGTAAGTTAAAACC
TTATAAAATCGATCGTTCACCTAAAATTCGATACCTGTCATTTGCAGAAGAAGCACGTTTACGCGAAGCATTAATCGAAC
GAGACAATCAACTCCGGCTGATGCGAAAAAATGGAAACCTCTGGCGAGAAAAGCGAGGTTATGATTTATTACCCGAGCTT
TCAGAAGACAATGCTTGTGATTACTTAATGCCGATGGTGCTATTGTCGATTAATACAGGATTAAGACGAGGCGAATTATT
TCATTTGACCTGGGATATGGTGAATTTGTCAGAAGGTTCATTAATTTTGTCTGGTGAAATTACAAAAAACAAACATTCTC
GTTATATTCCGCTCAATGATGAGGCTTATAAAATTTTGGATAATCTGCATAAAAAAGCAGAGAGAAAAGAAGGCTTAGTT
TTTCCAAGTAAAAATAATCAACCATTTAACCATGTGAAACGCTCATGGGGATCGTTATTGAAAAAAGCGAATATTACGCA
GTTTCGATGGCATGATTTACGACATCATTTTGCGAGTAAGTTGGTGATGGCTGGGGTAGATCTAAATACCGTTCGGGAGT
TATTGGGGCATTCTGATATTGCCATGACGCTGAGGTATGCGCATTTGGCGCCGGAGCATAAAGTGAATGCCGTTAGAAAA
ATAGATTGGTCAATGCAGGGATAG

Upstream 100 bases:

>100_bases
TTGGTTTTGTTGAATCGTTTAAAAACAATTGCACTCTTGAGACCTTGGAAAGCTATAAAGTGAAGGGTGCTGAAATATTA
CAACAATTAGCAGATTAATT

Downstream 100 bases:

>100_bases
GAAAATGAATAGTCATACTTCAAAATATGCAGAAAGAAACAGGCCCATAAGAAGAATTGAGCGATTTATTCTCAAGATAA
TGATTTTTGTTGTCATACCC

Product: site specific recombinase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKAKINNTLIKKLLPRDKEYEVHDLDLKGFMIRVFPSGTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGI
EPTAQKGINKPKTLQEFIESDYKPWVLSTHKRGQETLAGLIRCYKAFFSKPLGEITPALVEQWRVKRLNEGTSQATLNRN
ISMLKSLMTKAVEWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPEL
SEDNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNLHKKAERKEGLV
FPSKNNQPFNHVKRSWGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRK
IDWSMQG

Sequences:

>Translated_407_residues
MKAKINNTLIKKLLPRDKEYEVHDLDLKGFMIRVFPSGTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGI
EPTAQKGINKPKTLQEFIESDYKPWVLSTHKRGQETLAGLIRCYKAFFSKPLGEITPALVEQWRVKRLNEGTSQATLNRN
ISMLKSLMTKAVEWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPEL
SEDNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNLHKKAERKEGLV
FPSKNNQPFNHVKRSWGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRK
IDWSMQG
>Mature_407_residues
MKAKINNTLIKKLLPRDKEYEVHDLDLKGFMIRVFPSGTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGI
EPTAQKGINKPKTLQEFIESDYKPWVLSTHKRGQETLAGLIRCYKAFFSKPLGEITPALVEQWRVKRLNEGTSQATLNRN
ISMLKSLMTKAVEWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPEL
SEDNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNLHKKAERKEGLV
FPSKNNQPFNHVKRSWGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRK
IDWSMQG

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=171, Percent_Identity=33.9181286549708, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46950; Mature: 46950

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKINNTLIKKLLPRDKEYEVHDLDLKGFMIRVFPSGTMRYVCQYKRGKKINLGTVGVM
CCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHCCCCEECCCHHHHH
TAAQAREKAIEVLSNANKGIEPTAQKGINKPKTLQEFIESDYKPWVLSTHKRGQETLAGL
HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHH
IRCYKAFFSKPLGEITPALVEQWRVKRLNEGTSQATLNRNISMLKSLMTKAVEWGFLKEN
HHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHC
ALGKLKPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPEL
CCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCC
SEDNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLND
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCCEECCCC
EAYKILDNLHKKAERKEGLVFPSKNNQPFNHVKRSWGSLLKKANITQFRWHDLRHHFASK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRKIDWSMQG
HHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKAKINNTLIKKLLPRDKEYEVHDLDLKGFMIRVFPSGTMRYVCQYKRGKKINLGTVGVM
CCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHCCCCEECCCHHHHH
TAAQAREKAIEVLSNANKGIEPTAQKGINKPKTLQEFIESDYKPWVLSTHKRGQETLAGL
HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHH
IRCYKAFFSKPLGEITPALVEQWRVKRLNEGTSQATLNRNISMLKSLMTKAVEWGFLKEN
HHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHC
ALGKLKPYKIDRSPKIRYLSFAEEARLREALIERDNQLRLMRKNGNLWREKRGYDLLPEL
CCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCC
SEDNACDYLMPMVLLSINTGLRRGELFHLTWDMVNLSEGSLILSGEITKNKHSRYIPLND
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCCEECCCC
EAYKILDNLHKKAERKEGLVFPSKNNQPFNHVKRSWGSLLKKANITQFRWHDLRHHFASK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRKIDWSMQG
HHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]