Click here to switch to the map view.

The map label for this gene is 148360856

Identifier: 148360856

GI number: 148360856

Start: 616983

End: 617657

Strand: Reverse

Name: 148360856

Synonym: LPC_2816

Alternate gene names: NA

Gene position: 617657-616983 (Counterclockwise)

Preceding gene: 148360837

Following gene: 148360860

Centisome position: 17.27

GC content: 35.85

Gene sequence:

>675_bases
ATGAAAAATGCTACTAAAGTAAAAAAAGATAGTTCTGCAATGGGACAACGCATCAAAAGAGCACGTATGCTTGCTGGCTT
ATCTCGAAAAGATTTGGAAGAAAAGCATGGAATCAGTATCCATACGCTCCAATCATGGGAGCTTGGAAGAAACCCATTAA
ATAAAGCCAAAGCTGCTTCTTTAGTAGGAATACTTAATCAATATGATGTGAGTTGTTCAATTGATTGGTTATTAGAAGGC
ATAGGAAAAGGCCCATCAGTAATCGAAAATGAATTTCAAAATTATCCATTTCTTGCAGATACAGTTGGTAATCTTCTCGC
CTCAGAACAAGCCATACAAAAAGAGATAGACTTCTTTAAAACAAATAACCCAAATGCTGTTGTAATAACGGTCTCAGATG
ATGCGATGGAGCCGGAGTATAAAGTTGGAGACATTGTTGGCGGGATTAAATTTATAAATCAAAATAAAAAAAATCAATGC
GTAGGGCACAATTGTATAGTGGAAACCACCGAAGGCACCTTTTTTCGACGATTGATAAAAAGTGAAGATAAGTATTTATT
GGTTTGTAATAACAATAGAACTTCAGTCAGTGATCCCGTTATGTCAGCAGATTCAATTTTATCTATTGCCCCAGTTATTT
GGCATCGATGGAAATTTGATGCCTTATCAAACTAG

Upstream 100 bases:

>100_bases
CTTACACTCATAACGCGTATAAATCCACACTTCATATACGTGTATCGCGTATAATAATTTATTATATACATATAAAGCGT
ATAAATGTAAAGACATATTT

Downstream 100 bases:

>100_bases
GGCATACGATCAACCCAATCTACCCCTAAAAATCAACTAGTTACTCTCTGTATATTCTGACACAAGTGGATTACTAATTT
CGATTGATACAGAAGGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKNATKVKKDSSAMGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAASLVGILNQYDVSCSIDWLLEG
IGKGPSVIENEFQNYPFLADTVGNLLASEQAIQKEIDFFKTNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQC
VGHNCIVETTEGTFFRRLIKSEDKYLLVCNNNRTSVSDPVMSADSILSIAPVIWHRWKFDALSN

Sequences:

>Translated_224_residues
MKNATKVKKDSSAMGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAASLVGILNQYDVSCSIDWLLEG
IGKGPSVIENEFQNYPFLADTVGNLLASEQAIQKEIDFFKTNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQC
VGHNCIVETTEGTFFRRLIKSEDKYLLVCNNNRTSVSDPVMSADSILSIAPVIWHRWKFDALSN
>Mature_224_residues
MKNATKVKKDSSAMGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAASLVGILNQYDVSCSIDWLLEG
IGKGPSVIENEFQNYPFLADTVGNLLASEQAIQKEIDFFKTNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQC
VGHNCIVETTEGTFFRRLIKSEDKYLLVCNNNRTSVSDPVMSADSILSIAPVIWHRWKFDALSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24987; Mature: 24987

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNATKVKKDSSAMGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAAS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHH
LVGILNQYDVSCSIDWLLEGIGKGPSVIENEFQNYPFLADTVGNLLASEQAIQKEIDFFK
HHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEE
TNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQCVGHNCIVETTEGTFFRRLIK
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHC
SEDKYLLVCNNNRTSVSDPVMSADSILSIAPVIWHRWKFDALSN
CCCCEEEEECCCCCCCCCCHHCHHHHHHHHHHHHHHHCHHCCCC
>Mature Secondary Structure
MKNATKVKKDSSAMGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAAS
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHH
LVGILNQYDVSCSIDWLLEGIGKGPSVIENEFQNYPFLADTVGNLLASEQAIQKEIDFFK
HHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEE
TNNPNAVVITVSDDAMEPEYKVGDIVGGIKFINQNKKNQCVGHNCIVETTEGTFFRRLIK
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHC
SEDKYLLVCNNNRTSVSDPVMSADSILSIAPVIWHRWKFDALSN
CCCCEEEEECCCCCCCCCCHHCHHHHHHHHHHHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA