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The map label for this gene is csrA [H]

Identifier: 148360853

GI number: 148360853

Start: 619069

End: 619335

Strand: Direct

Name: csrA [H]

Synonym: LPC_2813

Alternate gene names: 148360853

Gene position: 619069-619335 (Clockwise)

Preceding gene: 148360854

Following gene: 148360852

Centisome position: 17.31

GC content: 41.95

Gene sequence:

>267_bases
ATGTTGGTATTAACAAGAAGAGTTGGGGAGTCTGTTGTGATCAGTGAGGATATTTACTGCACGATTGTGGGGTATCAAAA
CGATGAGGTCCGCCTTGCTTTTGATGCGCCTAAGTCCATCCCAATCCATCGTGATGAAATTCAACGCCGCATTTACCGCG
ATCAGATTAAAGATAACAAGTTTGTAGATAAAGCAGCTAACAACGAGAGCATTGTCGACAGGCTTATTAATAAGTTCAAA
AGCAGTGCTTCTCCAACAAATTCCTGA

Upstream 100 bases:

>100_bases
TCACGCCTGAAGAAGTTGCTCCTGCGAGTGCCGAAGTGGCGGAAGCGAATATTAAGCAATGTAAAGCATTTTTATTTTAA
AACCTGATAGGAGAGAAGAC

Downstream 100 bases:

>100_bases
GAATTGAGTCATGACTATCGATGAAGAACAGCTGATTACGGTTAAAGATCGAGCCAAAGAAAAGTTAAGGCGTGATCTGG
GTGGATTGATTGAACGGGCT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MLVLTRRVGESVVISEDIYCTIVGYQNDEVRLAFDAPKSIPIHRDEIQRRIYRDQIKDNKFVDKAANNESIVDRLINKFK
SSASPTNS

Sequences:

>Translated_88_residues
MLVLTRRVGESVVISEDIYCTIVGYQNDEVRLAFDAPKSIPIHRDEIQRRIYRDQIKDNKFVDKAANNESIVDRLINKFK
SSASPTNS
>Mature_88_residues
MLVLTRRVGESVVISEDIYCTIVGYQNDEVRLAFDAPKSIPIHRDEIQRRIYRDQIKDNKFVDKAANNESIVDRLINKFK
SSASPTNS

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=61, Percent_Identity=37.7049180327869, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 10113; Mature: 10113

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRRVGESVVISEDIYCTIVGYQNDEVRLAFDAPKSIPIHRDEIQRRIYRDQIKDNK
CEEEECCCCCEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
FVDKAANNESIVDRLINKFKSSASPTNS
CCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVLTRRVGESVVISEDIYCTIVGYQNDEVRLAFDAPKSIPIHRDEIQRRIYRDQIKDNK
CEEEECCCCCEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
FVDKAANNESIVDRLINKFKSSASPTNS
CCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]