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The map label for this gene is traI [H]

Identifier: 148360835

GI number: 148360835

Start: 635310

End: 637175

Strand: Reverse

Name: traI [H]

Synonym: LPC_2795

Alternate gene names: 148360835

Gene position: 637175-635310 (Counterclockwise)

Preceding gene: 148360834

Following gene: 148360836

Centisome position: 17.82

GC content: 40.14

Gene sequence:

>1866_bases
ATGATTATTCGCCATATTCCAATGAAGTCAGCAAGACTGAGCAGTTTTTCAGCTCTTGTAAAATACATTACTGATGAACA
AAATAAGCAGGAGCGAGTGGGTAAGGTCAGGATATCAAACTGTAACAGTGTTGATCCTACCTGGGCTATTCATGAAGTAT
TGGCAACTCAGGCGAGAAACCAAAGAGCTAAAAGCGATAAAACCTACCACATGCTCATATCTTTTGCCCCCGGGGAAAAT
CCCCCCAACGAGGTATTGAAAGCTATAGAGGAAAGGATCATATCATCTATTGGATTCAAAGATCATCAAAGGATTAGCGC
CATTCATCACGACACAGACAACCTTCATATTCATGTTGCCATCAATAAAATTCATCCAAAAGCCTTTAATATAATTGAGC
CCTATAGAGCTTATAGGACATTTTCAGAGGTGGCATCGAAATTGGAAATTGAATATGGTCTTGAAATAACCAATCATCAA
ACCCGAAAAAGTCGTTCAGAGAATCTTGCCGATGATATGGAACAACATTCTGGCATTGAAAGCTTGATTAACTGGATAAA
GAGAAATTGTCTGGAACAGATTAACCAGGCCAACCATTGGAATGAGGTTCATAAAATCCTATCCCTTCATGGCTTGGAAA
TTCATATTAAAGCTAATGGTCTGGTCTTTTATAATGAAGCAGGACTTATGGTTAAAGCAAGCTCCGTTTCACGATGTTTT
TCCAAAAAGAACCTGGAATCCAGGTTGGGTGAATTTAAGCCATCACCATTTAGTACTGAAAGATCCAGGCAAAATATTTA
TCGTTATGAACCACTAAATAGAAAAGTGATCGGCTCAGAAATTTATGCGCGTTACCTATATGAAAAAGAACATGGCAAAA
CGCTGCTTGCCGAGAAACTCAAACATCTGCGTGAAGCTAAAGCCAGACTGATTACGAAAGCCAAGAAACGTGGTCGAACC
AAACGAGCAGTTTTGAAGTTAATGAAAGCCCCGAGGACTCAAAAAAAATATCTTTACCAGCAAATCAGCAAAACCCTTTT
GAAAGAAATTGAAAAAGTTCGCCAAAATTATGCCAAAGAACGAAAGCATCTTCTTGAATTACATAAAAACAAAACCTGGG
CTGATTGGTTGCAGCAAAAAGCTCGGGAAGGAGACAAAGAAGCCTTAACAGCTATGCGTTATCACAATCGAAAAAATCAA
AGTAATTATTCCTTATCAGCCGCGTCATCTAATTTTTCCTTAGCGGATATTAAGCAAGTTGATTCCATTACTAAAGAGGG
AACAGAGATATATAAAATGGATAAGGCGGTCATCAGAAACACCGGCAAGGAAATTAAAATTTCTAAGGGCGGCTCTATTG
CTACACTGAAAAAAGCCATTGAGATGGCACAGCAGAGATACGGCAACTGTATCCAGGTAAATGGCTCGCCACTTTTTAAA
AAGATCATTCTTCAAATAACCATCCAGCATAATATCCCGCTCACTTTTGCTGATTCAGAAATGGAAGCACAGCGCCAAAA
AATGGTCTTAGAACAGGAGAGACGCTATGAACAATCAAGACGATACAGATTTAATGATGGAGGAAGAACTCCAAGAAGCA
ATGAAGCTGCTGGAGCAGCCATTGGAGAAAGAGGAACACTTTCCAGTACGAAGCCCAACGCTGACAGCATTAGACAAGGC
CCGCCAGCCAAAAGTCAAAACAGCTTGCGAGACTTGTCCCAACTCGATATGGTTCAGCTCGCCAGAAGAAGTAAAGTGTT
ATTGCCGGATAATGCACATGATCAGCTGGAGCGGCAAAGACTCAAATCTGATAACTATGTGCGACGGAAAGTTTCTGGAT
TAAGCAGAAAGGTAGAGCACAAATAA

Upstream 100 bases:

>100_bases
AGGATAGACGTGTCGCACATTTTGATCACCGAAAAGTAAAAGCCTTATTGGATCGCATTCAGACAATGCAGGCTGCAATG
TTTGAAGTGGTGAAAAAGTT

Downstream 100 bases:

>100_bases
TAAATGAATTGGGATAATTCACCCTGTAACCCTATAATTATAATTAAAGGGAATAATTAGGAAGTGCACTGATTTTTGGA
TTAATAATTGGTAATTTAGG

Product: TraI protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MIIRHIPMKSARLSSFSALVKYITDEQNKQERVGKVRISNCNSVDPTWAIHEVLATQARNQRAKSDKTYHMLISFAPGEN
PPNEVLKAIEERIISSIGFKDHQRISAIHHDTDNLHIHVAINKIHPKAFNIIEPYRAYRTFSEVASKLEIEYGLEITNHQ
TRKSRSENLADDMEQHSGIESLINWIKRNCLEQINQANHWNEVHKILSLHGLEIHIKANGLVFYNEAGLMVKASSVSRCF
SKKNLESRLGEFKPSPFSTERSRQNIYRYEPLNRKVIGSEIYARYLYEKEHGKTLLAEKLKHLREAKARLITKAKKRGRT
KRAVLKLMKAPRTQKKYLYQQISKTLLKEIEKVRQNYAKERKHLLELHKNKTWADWLQQKAREGDKEALTAMRYHNRKNQ
SNYSLSAASSNFSLADIKQVDSITKEGTEIYKMDKAVIRNTGKEIKISKGGSIATLKKAIEMAQQRYGNCIQVNGSPLFK
KIILQITIQHNIPLTFADSEMEAQRQKMVLEQERRYEQSRRYRFNDGGRTPRSNEAAGAAIGERGTLSSTKPNADSIRQG
PPAKSQNSLRDLSQLDMVQLARRSKVLLPDNAHDQLERQRLKSDNYVRRKVSGLSRKVEHK

Sequences:

>Translated_621_residues
MIIRHIPMKSARLSSFSALVKYITDEQNKQERVGKVRISNCNSVDPTWAIHEVLATQARNQRAKSDKTYHMLISFAPGEN
PPNEVLKAIEERIISSIGFKDHQRISAIHHDTDNLHIHVAINKIHPKAFNIIEPYRAYRTFSEVASKLEIEYGLEITNHQ
TRKSRSENLADDMEQHSGIESLINWIKRNCLEQINQANHWNEVHKILSLHGLEIHIKANGLVFYNEAGLMVKASSVSRCF
SKKNLESRLGEFKPSPFSTERSRQNIYRYEPLNRKVIGSEIYARYLYEKEHGKTLLAEKLKHLREAKARLITKAKKRGRT
KRAVLKLMKAPRTQKKYLYQQISKTLLKEIEKVRQNYAKERKHLLELHKNKTWADWLQQKAREGDKEALTAMRYHNRKNQ
SNYSLSAASSNFSLADIKQVDSITKEGTEIYKMDKAVIRNTGKEIKISKGGSIATLKKAIEMAQQRYGNCIQVNGSPLFK
KIILQITIQHNIPLTFADSEMEAQRQKMVLEQERRYEQSRRYRFNDGGRTPRSNEAAGAAIGERGTLSSTKPNADSIRQG
PPAKSQNSLRDLSQLDMVQLARRSKVLLPDNAHDQLERQRLKSDNYVRRKVSGLSRKVEHK
>Mature_621_residues
MIIRHIPMKSARLSSFSALVKYITDEQNKQERVGKVRISNCNSVDPTWAIHEVLATQARNQRAKSDKTYHMLISFAPGEN
PPNEVLKAIEERIISSIGFKDHQRISAIHHDTDNLHIHVAINKIHPKAFNIIEPYRAYRTFSEVASKLEIEYGLEITNHQ
TRKSRSENLADDMEQHSGIESLINWIKRNCLEQINQANHWNEVHKILSLHGLEIHIKANGLVFYNEAGLMVKASSVSRCF
SKKNLESRLGEFKPSPFSTERSRQNIYRYEPLNRKVIGSEIYARYLYEKEHGKTLLAEKLKHLREAKARLITKAKKRGRT
KRAVLKLMKAPRTQKKYLYQQISKTLLKEIEKVRQNYAKERKHLLELHKNKTWADWLQQKAREGDKEALTAMRYHNRKNQ
SNYSLSAASSNFSLADIKQVDSITKEGTEIYKMDKAVIRNTGKEIKISKGGSIATLKKAIEMAQQRYGNCIQVNGSPLFK
KIILQITIQHNIPLTFADSEMEAQRQKMVLEQERRYEQSRRYRFNDGGRTPRSNEAAGAAIGERGTLSSTKPNADSIRQG
PPAKSQNSLRDLSQLDMVQLARRSKVLLPDNAHDQLERQRLKSDNYVRRKVSGLSRKVEHK

Specific function: The initiation process of transfer DNA synthesis requires the interaction of at least three plasmid-specific components (traH, I, and J) at the transfer origin resulting in the assembly of a specialised nucleoprotein complex - the relaxosome. Site- and st

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005094 [H]

Pfam domain/function: PF03432 Relaxase [H]

EC number: NA

Molecular weight: Translated: 71628; Mature: 71628

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIRHIPMKSARLSSFSALVKYITDEQNKQERVGKVRISNCNSVDPTWAIHEVLATQARN
CEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHH
QRAKSDKTYHMLISFAPGENPPNEVLKAIEERIISSIGFKDHQRISAIHHDTDNLHIHVA
HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEE
INKIHPKAFNIIEPYRAYRTFSEVASKLEIEYGLEITNHQTRKSRSENLADDMEQHSGIE
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCHH
SLINWIKRNCLEQINQANHWNEVHKILSLHGLEIHIKANGLVFYNEAGLMVKASSVSRCF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCEEEECCCCCEEEHHHHHHHH
SKKNLESRLGEFKPSPFSTERSRQNIYRYEPLNRKVIGSEIYARYLYEKEHGKTLLAEKL
HHCCHHHHHHCCCCCCCCCHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
KHLREAKARLITKAKKRGRTKRAVLKLMKAPRTQKKYLYQQISKTLLKEIEKVRQNYAKE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKHLLELHKNKTWADWLQQKAREGDKEALTAMRYHNRKNQSNYSLSAASSNFSLADIKQV
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
DSITKEGTEIYKMDKAVIRNTGKEIKISKGGSIATLKKAIEMAQQRYGNCIQVNGSPLFK
HHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCHHHH
KIILQITIQHNIPLTFADSEMEAQRQKMVLEQERRYEQSRRYRFNDGGRTPRSNEAAGAA
HHHHHEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCC
IGERGTLSSTKPNADSIRQGPPAKSQNSLRDLSQLDMVQLARRSKVLLPDNAHDQLERQR
CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHH
LKSDNYVRRKVSGLSRKVEHK
HCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIRHIPMKSARLSSFSALVKYITDEQNKQERVGKVRISNCNSVDPTWAIHEVLATQARN
CEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHH
QRAKSDKTYHMLISFAPGENPPNEVLKAIEERIISSIGFKDHQRISAIHHDTDNLHIHVA
HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEE
INKIHPKAFNIIEPYRAYRTFSEVASKLEIEYGLEITNHQTRKSRSENLADDMEQHSGIE
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCHH
SLINWIKRNCLEQINQANHWNEVHKILSLHGLEIHIKANGLVFYNEAGLMVKASSVSRCF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCEEEECCCCCEEEHHHHHHHH
SKKNLESRLGEFKPSPFSTERSRQNIYRYEPLNRKVIGSEIYARYLYEKEHGKTLLAEKL
HHCCHHHHHHCCCCCCCCCHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
KHLREAKARLITKAKKRGRTKRAVLKLMKAPRTQKKYLYQQISKTLLKEIEKVRQNYAKE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKHLLELHKNKTWADWLQQKAREGDKEALTAMRYHNRKNQSNYSLSAASSNFSLADIKQV
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
DSITKEGTEIYKMDKAVIRNTGKEIKISKGGSIATLKKAIEMAQQRYGNCIQVNGSPLFK
HHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCHHHH
KIILQITIQHNIPLTFADSEMEAQRQKMVLEQERRYEQSRRYRFNDGGRTPRSNEAAGAA
HHHHHEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCC
IGERGTLSSTKPNADSIRQGPPAKSQNSLRDLSQLDMVQLARRSKVLLPDNAHDQLERQR
CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHH
LKSDNYVRRKVSGLSRKVEHK
HCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1665997; 2168553 [H]