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The map label for this gene is yiaD [H]

Identifier: 148360690

GI number: 148360690

Start: 811130

End: 811852

Strand: Reverse

Name: yiaD [H]

Synonym: LPC_2637

Alternate gene names: 148360690

Gene position: 811852-811130 (Counterclockwise)

Preceding gene: 148360683

Following gene: 148360691

Centisome position: 22.7

GC content: 41.22

Gene sequence:

>723_bases
ATGATTAAATCATTGATTAAAGGAGTGGATATGTCACGCAAATTAGCCAAAACACGAATCCTTGGTTATGGATTAATGAT
TTGCTTTCTTGCGGGCTGCTTTCATCCCCCTTATAACAACTTTCAACCCGATAGACGAGCTGTTAAGAGAGTAGGAGTAG
ATACAGGGATTGGTGCTGTAGCTGGGGTAATAGCCAGTGGTACTGCTTCAGGAACTCTTATTGGGGCAGCGGCTGGTGGT
ACCGTAGGTCTGGTTGCGAGTATCTACCGTGACAGCAAACGCAAAATCATCAGAGATCTGCAAAAGCAGGATATTCAGTA
TGTTGAATATGGAGATACCAGAACATTAATTATTCCTACAGACAAATATTTCATGTTTAGCAGCCCTCGCCTTAATGAAA
TATGCTATCCTGGCCTAAACAATGTCATCAGACTGTTAAATTTTTATCCTCAAAGTACGATTTATGTTGCCGGATTTACT
GATAATGTCGGATCACGCAGCCATAAGAGAAAACTTTCTCAAGCTCAAGCTGAAACAATGATGACTTTTCTCTGGGCTAA
TGGTATTGCAGCCAAAAGACTAAAAGCAGAAGGCTATGGAGATAAGAATGCGATTTCTGACAATGCTATTATTCATGGAA
GCGCTCAGAACAGAAGAATCGAGATCCAGTGGTTTACAAGCCCTGCTCAACCCCCACAACCACAAATGGCTTATGTAAAA
TAA

Upstream 100 bases:

>100_bases
TTCCTTGACTATTTCAATTATAGACGAAGAAAATTATTTTTTTATACGTCCTGTAAAAATATAAAGTGTTAGATTGCGAA
ATTTAATGAGATGCTTAATA

Downstream 100 bases:

>100_bases
AGGTTTATTAATGCGTTCAAGATTTATAGGCGGCATCTTATTGATAGTTGGTACCTCCATTGGTGGAGGGATGTTGGCTC
TACCAGTAGCTAATGCAGCA

Product: OmpA family transporter outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGG
TVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFT
DNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK

Sequences:

>Translated_240_residues
MIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGG
TVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFT
DNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK
>Mature_240_residues
MIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGG
TVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFT
DNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=135, Percent_Identity=31.8518518518519, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 26443; Mature: 26443

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAV
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHH
AGVIASGTASGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPT
HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEC
DKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETM
CCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
MTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK
HHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MIKSLIKGVDMSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAV
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHH
AGVIASGTASGTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPT
HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEC
DKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETM
CCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
MTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK
HHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]