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The map label for this gene is rpe [H]

Identifier: 148360682

GI number: 148360682

Start: 826110

End: 826763

Strand: Reverse

Name: rpe [H]

Synonym: LPC_2628

Alternate gene names: 148360682

Gene position: 826763-826110 (Counterclockwise)

Preceding gene: 148360681

Following gene: 148360683

Centisome position: 23.12

GC content: 41.44

Gene sequence:

>654_bases
ATGACATTCCAAATTTTACCCTCTTTACTGTCAGCGGACATGACCCGTTTAGGAGAGGAAGTAGATGCCGTTATGAAAGC
CGGCGCTGATTTTATTCATTTTGATGTCATGGATAACCATTATGTACCCAACCTGACCTTTGGCCCCGCTTTCTGTGACG
CTTTAATCAAAAAATTTCCAAATTTGCCGATTGATGTCCATTTGATGACCACTCCAGTTGATACTCTAATCGAAGCATTT
GCCAAAGCAGGTGCGAAACGTATCAGTATTCATCCAGATGCTACTATTCATTTAGACAGGAGTTTGCAGCTAATCAATAA
CCTTGGATGTGAAGCGGGTTTAGTGCTCAACCCAGCTACGTCAATCGACACATTAACCTGGTGTGCCCATAATCTAAAAT
TTGTTTTGGTCATGACAGTTAACCCAGGATTTGGCGGTCAAAAACTTATCCCGGAGGTTATACCCAAGCTCTCTAAAATT
CGGCAACAGCACCCAAATCTCGATCTTTGTGTTGATGGTGGAGTCACACCCCAGAATATTGCTTCATTAGCACATGCCGG
AGCTAACCAATTTGTTGCAGGTTCTGCTATATTCAATAGCAGTAATTATAGTGAAACCATTAAACATATGCGTGAACAAT
TAGCAAGCATTTAA

Upstream 100 bases:

>100_bases
TTAAAACAATAAAACTCGATATGAATCCAAATCGTAATGCTGGAATGTTTACCAAAGTCAGCTTATTATATGTAAAAGCA
AACTGTTGAATTACTAAATC

Downstream 100 bases:

>100_bases
AAGTGCCAAATAATTGCCCTCAAGCCTTATTAAGAGGAATTATGAAAAAATTATTAATTTTTTTATGTGGGCTTCTCTGT
TCTTTCAACTTGTTTGCTTT

Product: D-ribulose-5-phosphate-3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTFQILPSLLSADMTRLGEEVDAVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAF
AKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI

Sequences:

>Translated_217_residues
MTFQILPSLLSADMTRLGEEVDAVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAF
AKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI
>Mature_216_residues
TFQILPSLLSADMTRLGEEVDAVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAFA
KAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIR
QQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=209, Percent_Identity=39.7129186602871, Blast_Score=163, Evalue=1e-40,
Organism=Homo sapiens, GI219879828, Length=209, Percent_Identity=37.3205741626794, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI24307923, Length=164, Percent_Identity=34.1463414634146, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=50.6849315068493, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1790523, Length=220, Percent_Identity=35, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790754, Length=201, Percent_Identity=34.3283582089552, Blast_Score=112, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17552948, Length=211, Percent_Identity=40.2843601895735, Blast_Score=164, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=37.0535714285714, Blast_Score=158, Evalue=7e-40,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=37.5586854460094, Blast_Score=157, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23570; Mature: 23438

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQILPSLLSADMTRLGEEVDAVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFP
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
NLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPAT
CCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCEEECCCC
SIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIRQQHPNLDLCVDGGVTPQNI
CHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
ASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI
HHHHHCCCCCEEECHHEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFQILPSLLSADMTRLGEEVDAVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
NLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPAT
CCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCEEECCCC
SIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIRQQHPNLDLCVDGGVTPQNI
CHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
ASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI
HHHHHCCCCCEEECHHEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]