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The map label for this gene is ybhR [H]

Identifier: 148360664

GI number: 148360664

Start: 844604

End: 845722

Strand: Direct

Name: ybhR [H]

Synonym: LPC_2610

Alternate gene names: 148360664

Gene position: 844604-845722 (Clockwise)

Preceding gene: 148360665

Following gene: 148360661

Centisome position: 23.62

GC content: 38.25

Gene sequence:

>1119_bases
ATGCAACGTTTGTGGGCTATCATCCGCAAAGAATTCCTATTGATGAAACGTGATCCTGCTACTATCGTGATTATGGCAAT
CTTACCTTTGATTTTAGTTTGTATAGCCGGGTATGCCATAAACACCTATCCTCAAAAAGTTCCTACGGTGTTAATCAATT
TGGATAATACTGATGTAACACGTGAACTGGTTCGAGAGATACAAAATACCGGGTATTTTTCATTTGTGGCTTCGACGAAC
GATTCAGAATCAGCCCATCATTTATTGAAGACAGGCAAGGCTATCCTGGTATTGACTATTCCTGTGAACTTTACCAAAGC
AATTCGTCGAAACCAAAATCCAGCTCTTTTATTGGAAGATGGCAGTATAGATGCTATTGCTTCAGGTAGAGCTATCATTG
CTTTGGCGGGATTGAAATCATCATTTATAGAGAAAATGGGTCAAAAGGGTATTAATATTCCCTTGCAGAGGCCTGATTTT
CAAATCATAAACCACCGATTATATGATCCGGATCGCGTAACTCAATTTTATGTGGTTCCCGGGATGATAGGCTTGGTGCT
CATGTTAACGATGCTGCTGATAACCGTGGTTGTGGCATTTAGAGACGTTCAGGGTGGTACGATTGAATATTTATTAGCCT
CACCGACCCGCCCATCAGAAGTTTTATTAGGCGAAATTTTTTCTTATATCCTCATTGGTTATTTACAATTAAGTTTGGGT
CTTATCTTGTCTTACTACTTATTCCACGTTCCGTTTATTGGCGCCCCTCTTCTTTTATATTTATGCACCTTACCTTATAT
TGTGGCGGAATTATCGTTGGGTTTAACTATAGCCACTTTTTGTACATCTCAGTTTGAAGCAGTGCAAGTGATCAATGTTT
TCATTGCTTTTTCTATTCTGTTAACTGGATTTACTTTTCCGATATTTGGAATGCCTGAATGGGCGCAATATTTAGGATTA
TTTTTGCCATTGACGCATTTTTTTAAGATTATGTTTGGCATTATGCTAAAAGGAAATAATTTTGGTGAAATTTGGGCTAA
TTTATGGCCACTACTTGCGTATTGCCTTACCATGATTTCTTTAGCGACATGGCGATTTAAAAGGCATTTTGTACGCTAG

Upstream 100 bases:

>100_bases
TGAACAATTATGAAATCAAAAAAACAGATACTACTTTAGAAGACGCTTTCATTTATAAAATTATGAAAGAAGGGAATCCA
AAGTGAAGAGTCATTTTTCA

Downstream 100 bases:

>100_bases
ATACAATAAATATTCTCTCTCTTGCCAATGAAGGTGAGCAGAAAAAGTACTGTTTTAATGCCATTTCTTTCATGCAAGAG
AGTATTCCAAATCACCATAC

Product: ABC-type multidrug ABC transporter transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MQRLWAIIRKEFLLMKRDPATIVIMAILPLILVCIAGYAINTYPQKVPTVLINLDNTDVTRELVREIQNTGYFSFVASTN
DSESAHHLLKTGKAILVLTIPVNFTKAIRRNQNPALLLEDGSIDAIASGRAIIALAGLKSSFIEKMGQKGINIPLQRPDF
QIINHRLYDPDRVTQFYVVPGMIGLVLMLTMLLITVVVAFRDVQGGTIEYLLASPTRPSEVLLGEIFSYILIGYLQLSLG
LILSYYLFHVPFIGAPLLLYLCTLPYIVAELSLGLTIATFCTSQFEAVQVINVFIAFSILLTGFTFPIFGMPEWAQYLGL
FLPLTHFFKIMFGIMLKGNNFGEIWANLWPLLAYCLTMISLATWRFKRHFVR

Sequences:

>Translated_372_residues
MQRLWAIIRKEFLLMKRDPATIVIMAILPLILVCIAGYAINTYPQKVPTVLINLDNTDVTRELVREIQNTGYFSFVASTN
DSESAHHLLKTGKAILVLTIPVNFTKAIRRNQNPALLLEDGSIDAIASGRAIIALAGLKSSFIEKMGQKGINIPLQRPDF
QIINHRLYDPDRVTQFYVVPGMIGLVLMLTMLLITVVVAFRDVQGGTIEYLLASPTRPSEVLLGEIFSYILIGYLQLSLG
LILSYYLFHVPFIGAPLLLYLCTLPYIVAELSLGLTIATFCTSQFEAVQVINVFIAFSILLTGFTFPIFGMPEWAQYLGL
FLPLTHFFKIMFGIMLKGNNFGEIWANLWPLLAYCLTMISLATWRFKRHFVR
>Mature_372_residues
MQRLWAIIRKEFLLMKRDPATIVIMAILPLILVCIAGYAINTYPQKVPTVLINLDNTDVTRELVREIQNTGYFSFVASTN
DSESAHHLLKTGKAILVLTIPVNFTKAIRRNQNPALLLEDGSIDAIASGRAIIALAGLKSSFIEKMGQKGINIPLQRPDF
QIINHRLYDPDRVTQFYVVPGMIGLVLMLTMLLITVVVAFRDVQGGTIEYLLASPTRPSEVLLGEIFSYILIGYLQLSLG
LILSYYLFHVPFIGAPLLLYLCTLPYIVAELSLGLTIATFCTSQFEAVQVINVFIAFSILLTGFTFPIFGMPEWAQYLGL
FLPLTHFFKIMFGIMLKGNNFGEIWANLWPLLAYCLTMISLATWRFKRHFVR

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=368, Percent_Identity=26.0869565217391, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787011, Length=347, Percent_Identity=25.0720461095101, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI48994943, Length=358, Percent_Identity=25.9776536312849, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI226510979, Length=331, Percent_Identity=21.4501510574018, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI85725260, Length=375, Percent_Identity=23.2, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725262, Length=375, Percent_Identity=23.2, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650855, Length=370, Percent_Identity=23.2432432432432, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24650853, Length=370, Percent_Identity=23.2432432432432, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41877; Mature: 41877

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLWAIIRKEFLLMKRDPATIVIMAILPLILVCIAGYAINTYPQKVPTVLINLDNTDVT
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEECCCCHHH
RELVREIQNTGYFSFVASTNDSESAHHLLKTGKAILVLTIPVNFTKAIRRNQNPALLLED
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCEEEEEC
GSIDAIASGRAIIALAGLKSSFIEKMGQKGINIPLQRPDFQIINHRLYDPDRVTQFYVVP
CCCCEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHEEEEEHH
GMIGLVLMLTMLLITVVVAFRDVQGGTIEYLLASPTRPSEVLLGEIFSYILIGYLQLSLG
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LILSYYLFHVPFIGAPLLLYLCTLPYIVAELSLGLTIATFCTSQFEAVQVINVFIAFSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGFTFPIFGMPEWAQYLGLFLPLTHFFKIMFGIMLKGNNFGEIWANLWPLLAYCLTMIS
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LATWRFKRHFVR
HHHHHHHHHCCC
>Mature Secondary Structure
MQRLWAIIRKEFLLMKRDPATIVIMAILPLILVCIAGYAINTYPQKVPTVLINLDNTDVT
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEECCCCHHH
RELVREIQNTGYFSFVASTNDSESAHHLLKTGKAILVLTIPVNFTKAIRRNQNPALLLED
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCEEEEEC
GSIDAIASGRAIIALAGLKSSFIEKMGQKGINIPLQRPDFQIINHRLYDPDRVTQFYVVP
CCCCEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHEEEEEHH
GMIGLVLMLTMLLITVVVAFRDVQGGTIEYLLASPTRPSEVLLGEIFSYILIGYLQLSLG
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LILSYYLFHVPFIGAPLLLYLCTLPYIVAELSLGLTIATFCTSQFEAVQVINVFIAFSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGFTFPIFGMPEWAQYLGLFLPLTHFFKIMFGIMLKGNNFGEIWANLWPLLAYCLTMIS
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LATWRFKRHFVR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]