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The map label for this gene is sohB [H]

Identifier: 148360499

GI number: 148360499

Start: 1036505

End: 1037440

Strand: Reverse

Name: sohB [H]

Synonym: LPC_2440

Alternate gene names: 148360499

Gene position: 1037440-1036505 (Counterclockwise)

Preceding gene: 148360487

Following gene: 148360500

Centisome position: 29.01

GC content: 38.14

Gene sequence:

>936_bases
ATGGAATTCCTTAGTGAATATGGCATGTTTCTCTTAAAATGCATCACTCTCGTCATCGCATTACTCATTCTTCTGGCAGG
TATATTTTCTATGGGTCGCAAAACCAAACCCAAACTGGAAATTACCTCTCTTAATGAAGAGTATGAGCACCTGAATGCCT
TAATGAATAAAGAGATTTTAGGAAAAAAACCTGGAAAAAAGAAAAAAGATAAAACCAAGCGCCCGGTTCTTTATGTCATT
GATTTCAGCGGTGATATCAAAGCAACCCAAGTTGAACAACTAAGAGATGAAGTCACATCGGTATTAAGTATAGCAAAACC
TGAGGATGAGGTTTTAGTAAGGTTGGAAAGCCCTGGAGGGGCCGTCAATGGTTATGGATTGGCTGCGTCCCAGTTACAGC
GAATCCGTGATAAAAAAATTCCTTTGACTGTCAGCATAGACAAAATGGCAGCCAGCGGCGGATATTTAATGGCCTGCGTA
GCAAATAAAATAATTGCTGCCCCATTCGCAATAATCGGCTCTATAGGTGTAGTTGCTCAAATTCCTAATTTTCATCGCTG
GTTAAAGAAAAACAACATTGATGTTGAGCTATTAACTGCAGGAGAATACAAACGCACCCTAACACTTTTTGCGGAAAATA
CTGAAAAAGGTAGAAAAAAGTTTCAGGAAGATTTGGAAAAAATTCATACTGCATTCAGAGAGTATGTTCTTAAAAATAGA
AGTCAACTCGATATAGATAAGGTTGCAACTGGTGAACATTGGATAGCAAAAGATGCTTTTGATCTCAGGCTCGTTGATAA
GTTAGCTACTAGCGATGAATATTTAATAGAAAAAATGGCGGAGTTTAATGCATTCAAATTAACTGTCCATGCCAAATTGC
CAATTATAAGCAAGGTGCTTAAACCGGCAATGAGACTCATTCATCCGTGGATTTAA

Upstream 100 bases:

>100_bases
AGAAAAATCCCCAATGCCTTCGTTAAAAGTTATTTAATTTTTGCTTGCGAAGTGAGTGGATGATCGCCATAATCTGCTTT
ATTTTTTGCAAAGGTATATG

Downstream 100 bases:

>100_bases
AAATTAGTACTGAAACAGCTTGGGAACGCTATTGAAATTTAATACCGTTAAATCAGGCAGCATTCCATAGGAAACGAGAT
CAATTTTATCATGGGCTTAA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MEFLSEYGMFLLKCITLVIALLILLAGIFSMGRKTKPKLEITSLNEEYEHLNALMNKEILGKKPGKKKKDKTKRPVLYVI
DFSGDIKATQVEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACV
ANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR
SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVHAKLPIISKVLKPAMRLIHPWI

Sequences:

>Translated_311_residues
MEFLSEYGMFLLKCITLVIALLILLAGIFSMGRKTKPKLEITSLNEEYEHLNALMNKEILGKKPGKKKKDKTKRPVLYVI
DFSGDIKATQVEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACV
ANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR
SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVHAKLPIISKVLKPAMRLIHPWI
>Mature_311_residues
MEFLSEYGMFLLKCITLVIALLILLAGIFSMGRKTKPKLEITSLNEEYEHLNALMNKEILGKKPGKKKKDKTKRPVLYVI
DFSGDIKATQVEQLRDEVTSVLSIAKPEDEVLVRLESPGGAVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACV
ANKIIAAPFAIIGSIGVVAQIPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR
SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVHAKLPIISKVLKPAMRLIHPWI

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=305, Percent_Identity=47.8688524590164, Blast_Score=286, Evalue=8e-79,
Organism=Escherichia coli, GI1788064, Length=204, Percent_Identity=27.9411764705882, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 35024; Mature: 35024

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLSEYGMFLLKCITLVIALLILLAGIFSMGRKTKPKLEITSLNEEYEHLNALMNKEIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
GKKPGKKKKDKTKRPVLYVIDFSGDIKATQVEQLRDEVTSVLSIAKPEDEVLVRLESPGG
CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
AVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQ
CCCCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR
CCHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVHAKLPIISKVL
CCCCHHHHCCCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCHHHHHHH
KPAMRLIHPWI
HHHHHHHCCCC
>Mature Secondary Structure
MEFLSEYGMFLLKCITLVIALLILLAGIFSMGRKTKPKLEITSLNEEYEHLNALMNKEIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
GKKPGKKKKDKTKRPVLYVIDFSGDIKATQVEQLRDEVTSVLSIAKPEDEVLVRLESPGG
CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
AVNGYGLAASQLQRIRDKKIPLTVSIDKMAASGGYLMACVANKIIAAPFAIIGSIGVVAQ
CCCCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IPNFHRWLKKNNIDVELLTAGEYKRTLTLFAENTEKGRKKFQEDLEKIHTAFREYVLKNR
CCHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SQLDIDKVATGEHWIAKDAFDLRLVDKLATSDEYLIEKMAEFNAFKLTVHAKLPIISKVL
CCCCHHHHCCCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCHHHHHHH
KPAMRLIHPWI
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]