Click here to switch to the map view.

The map label for this gene is yegE [H]

Identifier: 148360316

GI number: 148360316

Start: 1232439

End: 1233302

Strand: Direct

Name: yegE [H]

Synonym: LPC_2253

Alternate gene names: 148360316

Gene position: 1232439-1233302 (Clockwise)

Preceding gene: 148360317

Following gene: 148360315

Centisome position: 34.46

GC content: 39.47

Gene sequence:

>864_bases
ATGATTGTGGTTGGTATTGTCTTTCTCATCGGTAGTGCCTATTTAATTAAAAGCGTACTGCAACAAACGAACCATTATCG
TTGGCAGTGGCTCGTTTATCTTGTTTTTATTGGCGCGTTTATTCTAAGTTATTCGGCCAGTATTTTTTATGGTCTCTTGG
TTGATCCCCATTGTCTTAATTATTTTTATGGCAGTGTGTTTTTATTAGGCGCTACCTATGTTTATTTGTCTTGTCGTCTT
ATGACGAAGACCATTCAAAAGATGGAAGTGATGGATGATTTAAAAAATCGCTATGAACTATTAAGGCATCATGTCAAATA
CGATTCGCTGACCGGTTGCCATAACCGAGAGACTCTTTTTGAAATGTTGAACGCACGGTTTCAGCAAATTAAGAGCAATG
ATGGATGGGTTATTGTCCTTTTTATTGATATGGATAAATTTAAGGACGTGAACGATCGTTATGGCCATGATGTGGGAGAT
AACACCTTGGCAGCATTTGGACAACTCCTAAGGCAGCGATTGCGAAAGGATGATATCGTGGCTCGTTATGGTGGTGATGA
ATTCATTGCTGTGATGGAACACGTCTCCTTGGATGAAGCGAAAAAAATTGCAGAAAATCTTATCACAGTAGCCAAACAAT
CCTTCAAAAAAGGTATTTTATCGAAGCTTAATCTAGGCTGCTCCATTGGCATCACTCAGATGAATCCACACTCGGCTTCA
GTGAATAGCGTGATTAAAGAAGCGGATTTGGCGTGTTATGCGGCAAAGCAAAGAAAAATCAATGGTTCCGTTTGTGTCTA
TAATTCGATGCTTGCAACAAGGAACGATACGATTGATTTGGGCATTCATCAAGTTGCCGAATAA

Upstream 100 bases:

>100_bases
ATGAAAAAAACGGTTGTTCATAGAATAAAAACAAAAGAGATCTATACTAATAGGAAGCATCGGTTGTTCGTAAGGCAAAA
TCATGGTGTTCCCAGTTATT

Downstream 100 bases:

>100_bases
AAAATGAAAACGCACAAAACAGTCGTCTTACTGCAGCAGTGCATTAAGTTCGCTAATAGCGTGCTTTTCTATTTTTTGTT
CTACCTCGTCAATTAATACA

Product: GGDEF/EAL domain-containing sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MIVVGIVFLIGSAYLIKSVLQQTNHYRWQWLVYLVFIGAFILSYSASIFYGLLVDPHCLNYFYGSVFLLGATYVYLSCRL
MTKTIQKMEVMDDLKNRYELLRHHVKYDSLTGCHNRETLFEMLNARFQQIKSNDGWVIVLFIDMDKFKDVNDRYGHDVGD
NTLAAFGQLLRQRLRKDDIVARYGGDEFIAVMEHVSLDEAKKIAENLITVAKQSFKKGILSKLNLGCSIGITQMNPHSAS
VNSVIKEADLACYAAKQRKINGSVCVYNSMLATRNDTIDLGIHQVAE

Sequences:

>Translated_287_residues
MIVVGIVFLIGSAYLIKSVLQQTNHYRWQWLVYLVFIGAFILSYSASIFYGLLVDPHCLNYFYGSVFLLGATYVYLSCRL
MTKTIQKMEVMDDLKNRYELLRHHVKYDSLTGCHNRETLFEMLNARFQQIKSNDGWVIVLFIDMDKFKDVNDRYGHDVGD
NTLAAFGQLLRQRLRKDDIVARYGGDEFIAVMEHVSLDEAKKIAENLITVAKQSFKKGILSKLNLGCSIGITQMNPHSAS
VNSVIKEADLACYAAKQRKINGSVCVYNSMLATRNDTIDLGIHQVAE
>Mature_287_residues
MIVVGIVFLIGSAYLIKSVLQQTNHYRWQWLVYLVFIGAFILSYSASIFYGLLVDPHCLNYFYGSVFLLGATYVYLSCRL
MTKTIQKMEVMDDLKNRYELLRHHVKYDSLTGCHNRETLFEMLNARFQQIKSNDGWVIVLFIDMDKFKDVNDRYGHDVGD
NTLAAFGQLLRQRLRKDDIVARYGGDEFIAVMEHVSLDEAKKIAENLITVAKQSFKKGILSKLNLGCSIGITQMNPHSAS
VNSVIKEADLACYAAKQRKINGSVCVYNSMLATRNDTIDLGIHQVAE

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=32.9113924050633, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=30, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788381, Length=189, Percent_Identity=31.7460317460317, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=36.5853658536585, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=31.25, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=33.5365853658537, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=32.2368421052632, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=154, Percent_Identity=29.2207792207792, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=156, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=156, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787056, Length=206, Percent_Identity=28.6407766990291, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR007894 [H]

Pfam domain/function: PF00990 GGDEF; PF05230 MASE2 [H]

EC number: NA

Molecular weight: Translated: 32662; Mature: 32662

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVVGIVFLIGSAYLIKSVLQQTNHYRWQWLVYLVFIGAFILSYSASIFYGLLVDPHCLN
CHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YFYGSVFLLGATYVYLSCRLMTKTIQKMEVMDDLKNRYELLRHHVKYDSLTGCHNRETLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
EMLNARFQQIKSNDGWVIVLFIDMDKFKDVNDRYGHDVGDNTLAAFGQLLRQRLRKDDIV
HHHHHHHHHHCCCCCEEEEEEEECHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
ARYGGDEFIAVMEHVSLDEAKKIAENLITVAKQSFKKGILSKLNLGCSIGITQMNPHSAS
ECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECEECCCCCCHH
VNSVIKEADLACYAAKQRKINGSVCVYNSMLATRNDTIDLGIHQVAE
HHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MIVVGIVFLIGSAYLIKSVLQQTNHYRWQWLVYLVFIGAFILSYSASIFYGLLVDPHCLN
CHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YFYGSVFLLGATYVYLSCRLMTKTIQKMEVMDDLKNRYELLRHHVKYDSLTGCHNRETLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
EMLNARFQQIKSNDGWVIVLFIDMDKFKDVNDRYGHDVGDNTLAAFGQLLRQRLRKDDIV
HHHHHHHHHHCCCCCEEEEEEEECHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE
ARYGGDEFIAVMEHVSLDEAKKIAENLITVAKQSFKKGILSKLNLGCSIGITQMNPHSAS
ECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECEECCCCCCHH
VNSVIKEADLACYAAKQRKINGSVCVYNSMLATRNDTIDLGIHQVAE
HHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]