Click here to switch to the map view.

The map label for this gene is capB [H]

Identifier: 148360277

GI number: 148360277

Start: 1272716

End: 1272937

Strand: Reverse

Name: capB [H]

Synonym: LPC_2214

Alternate gene names: 148360277

Gene position: 1272937-1272716 (Counterclockwise)

Preceding gene: 148360276

Following gene: 148360278

Centisome position: 35.59

GC content: 39.19

Gene sequence:

>222_bases
ATGACTAATAAAATTCGTGGTAAAGTCAAATGGTTTAATAAAGACAAGGGATTTGGTTTTATTGAAAGCAGTGGCAAGGA
TTACTTTGTCCACTTTAGCTCGATTCAAAGTAACGGCTTTAAAACGCTTCCCGATGGGGCAACCGTTCTTTTTAAAATGG
GAAAAGGACAGAAAGGACCTCAGGCCGAGGAAGTAGAGGTTATCAAAAATGACCACCATTAG

Upstream 100 bases:

>100_bases
CCATTAAATCACTAAGAGCTCTCTGGTTAACAAGTATTGACAAAAAGAACAACGTGGCATGACACTATGTAACCTGCTTG
ATTATAAGGAAATAAACAAA

Downstream 100 bases:

>100_bases
GTCTAGGCAAGACCGTTCTGATGAACAATAACACTTATTTTTACTGCATGAAACCATCAAGGAGGAAAGAAGTGGACCAA
CGAGTTGCTTTAGTCACAGG

Product: cold shock domain family transporter protein

Products: NA

Alternate protein names: C8.0; Cold acclimation protein B [H]

Number of amino acids: Translated: 73; Mature: 72

Protein sequence:

>73_residues
MTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQAEEVEVIKNDHH

Sequences:

>Translated_73_residues
MTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQAEEVEVIKNDHH
>Mature_72_residues
TNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGPQAEEVEVIKNDHH

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=59.7014925373134, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=60, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=52.8571428571429, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=52.1739130434783, Blast_Score=72, Evalue=6e-15,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=54.2857142857143, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=51.4285714285714, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=48.3870967741936, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8218; Mature: 8087

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGP
CCCCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCEECCCCCEEEEEECCCCCCC
QAEEVEVIKNDHH
CCCCEEEEECCCC
>Mature Secondary Structure 
TNKIRGKVKWFNKDKGFGFIESSGKDYFVHFSSIQSNGFKTLPDGATVLFKMGKGQKGP
CCCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCEECCCCCEEEEEECCCCCCC
QAEEVEVIKNDHH
CCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697 [H]