Definition | Legionella pneumophila str. Corby chromosome, complete genome. |
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Accession | NC_009494 |
Length | 3,576,470 |
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The map label for this gene is hepA [H]
Identifier: 148359836
GI number: 148359836
Start: 2712056
End: 2714932
Strand: Direct
Name: hepA [H]
Synonym: LPC_1764
Alternate gene names: 148359836
Gene position: 2712056-2714932 (Clockwise)
Preceding gene: 148359834
Following gene: 148359842
Centisome position: 75.83
GC content: 39.66
Gene sequence:
>2877_bases ATGACATTTCGCATTGGTCAACGCTGGATAAGTAATACCGAATCACAACTGGGTTTAGGCATTATTACTGAAGTAGATGG CAGACAAGTTTCTATCAGTTTCCCTGCTGCTGGGGAGGATAGAATTTATGCTATAGATAATGCACCATTAAGCCGCATAG TCTATAAAACAGGTGAAGAAATACTTACCAATGATCAGAAAAGAATAAAAGTAACTTCCATCCAGGAACAAGATGGTGTT TTACTGTATACAGGAAATGACGACTTGGGAAATGTGGCTCAAGTTAGTGAGTTGGCACTTAATTGTTTTATCAAACTTAA CTCCCCTCAACAAAGGCTCTTCAGCGGATTATTGGACAAACTAAATGCTTTTAAACTCAGAATTAAAACATTAGAGCATT TAGGCCGATTACAACAGTCTAAAGCAAGAGGCCTATTAGGTTCACGAACTAACCATCTTATCCACCAAATCTATATCGCT TATGAAGTTGCTCAAAGATTTGCTCCCAGAGTGATGCTTGCCGACGAGGTTGGATTGGGGAAAACCATTGAAGCGGGAAT GATTCTGCATTATCAACTGCATACTGGCCGTGCTTCACGCGTACTGATCGTTGTTCCAAATTCATTGATTCACCAATGGT TTGTCGAAATGTTAAGGAGGTTCAATCTGCATTTCTCTATCATTGGTCCAAATCAATACGATGCCATGCCATCCACACTT GATGAGTTGGAAGATAACGACAATCTAATCGAGCCAGCATCAGAAGATGGCAATCTGTTTGAAGGTGAACAACTGGTATT AACAAGCCTGGATTTCCTTATGGAAAATGAAACAGCACGTCAACAGGCATTAGCTGCGCAATGGGATCTTCTGGTAGTAG ATGAGGCGCATCATCTTTATTGGTCGGAAGACTCACAAAGTCCCGAATACACGTTCATTGAAAAATTATCCGCTCGAGGC ACAGGCCTGCTTCTTCTTACCGCGACTCCTGAACAAGTTGGAATGAAGAGTCATTTCGCTCGTCTTCGTCTACTTGATCC AGCACGCTTTTATGATTTTTCAGCCTTTGTAAATGAAGAAAAGCAATACCATGAAGTTAATAAAATAGTTCAGGATCTCA TGGATTATAAGGAAAAAAATGGCGTAGATGAGTTAAATCCCCAACTCCACTCTCATTTAAAACAACTCTTGGGTAAAGAA GCTCCTGCTGACATTAATGCAACGATCAAAGAGTTGCTTGATAGATTCGGCACAGGTCGAGTACTTTTTCGCAATACTCG TGCAGCGATTAAAGGATTTCCCGAAAGAAGAATACACCCTGTCGCATTGACATGCCCAACGCTTTATTCCGAGATAATCA GAGAATCCAACTTAATCCATCTTTACCCAGAAACTTTGCTTAATAATGACTCCTGGATAGAGCATGACCCCCGAGTGCAA TGGCTTGTTAACAAAATTAATGAATTACGTCCGGAAAAAATTCTGGTAATCTGCGCAAAGGCAAAAACAGCCATTAGTCT GGAACAGTATTTAAAATTAAAAACAGGCATTCGAAGTGCTTTATTTCATGAAGGACTTACCATTATAGAGCGTGACAGAG CTGCCGCTTATTTTGCAGAACAAGAAAATGGTGCACAGGTTCTTGTTTGTTCCGAGATAGGAAGTGAGGGAAGAAACTTC CAGTTTTCCCATCATTTGATTTTGTTTGATTTGCCATTAAACCCTGACCTTTTAGAACAGCGTATCGGGCGTTTGGATCG TATTGGTCAAAATCATCCCATTGAAATTCATGTACCCTATTTAGCGGGTACTGCGCAGGAAAAGCTATTTCGCTGGTATC ACGAAGGAATCAACATTCTTCAACAAAGCTGCTCTGTTGGCTTTTCAATTTTTGAAACTTTTGAAAATCGGCTGACACCT GTTTTATCTAATCCCATGCAGGAGACGAACGAACACTCATTAGAGAAGCTTATTGCTGATACTCAATTGCATACCCAGCA TATTAAGGAAGCCCTTAATGCAGGAAGAGATAGATTACTAGAATTAAACTCCTGTAATTACACTATAGGGAAAGAACTCA TTGAAGCGATAGAAGCAGAAGAAAATTGCCTTGAACTTGAAAATTACATGTCGCAAGTGTACCAGGAATATGGAATTGAT CAGGAATATCATTCGGAGAATGCCGAAATATTGCGCCCTGGTAACCACATGAAAACCGCTCATTTTCCTGGACTAAAAGA AGACGGTATGACCGTCACTTATTCTCGCCCTAAAGCCCTTGTTCGGGAAGACATGGAGTTTTTAAGTTGGGAACACCCCA TGGTTTACGACACTATGGAAATGATCCTGGAGTCAGAACTTGGCAACGCCACAGTGACTACTATTTCAATCAAAAGCATA AAACCGGGTACCCTCTTCCTGGAAACTTTTTATACCATTAATTCTTCCGCCCCTAAATACTTACAACTTGACCGATTTAT TCCTTCATTGCCAATTCGAATTTTGATGGATACTACCGGTAAAAATTTATCAAGCATTTTAAGTTATGAGCAGCTTAATA ATCTGTGCCAACCACTTAAACGTCATCTGGGTTACCCTGTTATTAAACAAGTTCGTGAAGAGATTGAATCCATTCTGCAA CAAACCAACAAAATCGCAGAAGATCAGATGAAATTATTTATTGGAGAAGCAAAATCAATGATGGAGCTAACGACTTCTCA AGAAGTTAATCGACTGGAATCCTTGCAAAAAATTAATCCCGCCATTCGTGATGAAGAAATTGAGTTCTTTAAAAAGAAAA TTTCAGAGAGTAATTACTTCATTAATAGCTCCACTTTAAAACTTCAAGCGATTCGGGTTGTAATCAATGTCAGTTAG
Upstream 100 bases:
>100_bases CCACTAAAATTATTTCTGTAACTTGTATCAAAAATTGATACAATTACGCATTAAAACATACAGTTCATTTTCGTTTTTAA TAATGAGGACGTTTCTCTAA
Downstream 100 bases:
>100_bases TTAATCATCCCTTGACAAATTGACACGAGAATAAAAGAAATTGCTTGTCTTACAGGTTAGACGCTGATTTCACAAAATCA ACAACTATTAGATTATTAAA
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 958; Mature: 957
Protein sequence:
>958_residues MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEEILTNDQKRIKVTSIQEQDGV LLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIVVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL DELEDNDNLIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARG TGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEVNKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKE APADINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPTLYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSALFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNF QFSHHLILFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFETFENRLTP VLSNPMQETNEHSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRPKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSI KPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSSILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQ QTNKIAEDQMKLFIGEAKSMMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS
Sequences:
>Translated_958_residues MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEEILTNDQKRIKVTSIQEQDGV LLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIA YEVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIVVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL DELEDNDNLIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARG TGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEVNKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKE APADINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPTLYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSALFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNF QFSHHLILFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFETFENRLTP VLSNPMQETNEHSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRPKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSI KPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSSILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQ QTNKIAEDQMKLFIGEAKSMMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS >Mature_957_residues TFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEEILTNDQKRIKVTSIQEQDGVL LYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDKLNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAY EVAQRFAPRVMLADEVGLGKTIEAGMILHYQLHTGRASRVLIVVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTLD ELEDNDNLIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLYWSEDSQSPEYTFIEKLSARGT GLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEEKQYHEVNKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEA PADINATIKELLDRFGTGRVLFRNTRAAIKGFPERRIHPVALTCPTLYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQW LVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSALFHEGLTIIERDRAAAYFAEQENGAQVLVCSEIGSEGRNFQ FSHHLILFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPYLAGTAQEKLFRWYHEGINILQQSCSVGFSIFETFENRLTPV LSNPMQETNEHSLEKLIADTQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGIDQ EYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRPKALVREDMEFLSWEHPMVYDTMEMILESELGNATVTTISIKSIK PGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTGKNLSSILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQQ TNKIAEDQMKLFIGEAKSMMELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=988, Percent_Identity=42.8137651821862, Blast_Score=828, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 109530; Mature: 109398
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEE CCCCCCHHHHCCCCHHCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCHH ILTNDQKRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDK HHCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHH LNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAYEVAQRFAPRVMLADEVGLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC KTIEAGMILHYQLHTGRASRVLIVVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL CEECCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH DELEDNDNLIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLY HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCCEEE WSEDSQSPEYTFIEKLSARGTGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEE ECCCCCCCCHHHHHHHCCCCCEEEEEEECHHHHCHHHHHHHHEECCCHHHHHHHHHHCCH KQYHEVNKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEAPADINATIKELLDRFGTGR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCE VLFRNTRAAIKGFPERRIHPVALTCPTLYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ EEEECCHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCHHH WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSALFHEGLTIIERDRAAAYFAE HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHEEEE QENGAQVLVCSEIGSEGRNFQFSHHLILFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPY CCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECC LAGTAQEKLFRWYHEGINILQQSCSVGFSIFETFENRLTPVLSNPMQETNEHSLEKLIAD CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHH TQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID HHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRPKALVREDMEFLSWEHPMVYDTME HHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH MILESELGNATVTTISIKSIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTG HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCC KNLSSILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQQTNKIAEDQMKLFIGEAKSM CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS HHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECC >Mature Secondary Structure TFRIGQRWISNTESQLGLGIITEVDGRQVSISFPAAGEDRIYAIDNAPLSRIVYKTGEE CCCCCHHHHCCCCHHCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCHH ILTNDQKRIKVTSIQEQDGVLLYTGNDDLGNVAQVSELALNCFIKLNSPQQRLFSGLLDK HHCCCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHH LNAFKLRIKTLEHLGRLQQSKARGLLGSRTNHLIHQIYIAYEVAQRFAPRVMLADEVGLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC KTIEAGMILHYQLHTGRASRVLIVVPNSLIHQWFVEMLRRFNLHFSIIGPNQYDAMPSTL CEECCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHH DELEDNDNLIEPASEDGNLFEGEQLVLTSLDFLMENETARQQALAAQWDLLVVDEAHHLY HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCCEEE WSEDSQSPEYTFIEKLSARGTGLLLLTATPEQVGMKSHFARLRLLDPARFYDFSAFVNEE ECCCCCCCCHHHHHHHCCCCCEEEEEEECHHHHCHHHHHHHHEECCCHHHHHHHHHHCCH KQYHEVNKIVQDLMDYKEKNGVDELNPQLHSHLKQLLGKEAPADINATIKELLDRFGTGR HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCE VLFRNTRAAIKGFPERRIHPVALTCPTLYSEIIRESNLIHLYPETLLNNDSWIEHDPRVQ EEEECCHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECHHHHCCCCCCCCCCCHHH WLVNKINELRPEKILVICAKAKTAISLEQYLKLKTGIRSALFHEGLTIIERDRAAAYFAE HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHEEEE QENGAQVLVCSEIGSEGRNFQFSHHLILFDLPLNPDLLEQRIGRLDRIGQNHPIEIHVPY CCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECC LAGTAQEKLFRWYHEGINILQQSCSVGFSIFETFENRLTPVLSNPMQETNEHSLEKLIAD CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHH TQLHTQHIKEALNAGRDRLLELNSCNYTIGKELIEAIEAEENCLELENYMSQVYQEYGID HHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QEYHSENAEILRPGNHMKTAHFPGLKEDGMTVTYSRPKALVREDMEFLSWEHPMVYDTME HHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH MILESELGNATVTTISIKSIKPGTLFLETFYTINSSAPKYLQLDRFIPSLPIRILMDTTG HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCC KNLSSILSYEQLNNLCQPLKRHLGYPVIKQVREEIESILQQTNKIAEDQMKLFIGEAKSM CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELTTSQEVNRLESLQKINPAIRDEEIEFFKKKISESNYFINSSTLKLQAIRVVINVS HHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA