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The map label for this gene is lidB

Identifier: 148359813

GI number: 148359813

Start: 2686712

End: 2689258

Strand: Direct

Name: lidB

Synonym: LPC_1738

Alternate gene names: NA

Gene position: 2686712-2689258 (Clockwise)

Preceding gene: 148359812

Following gene: 148359814

Centisome position: 75.12

GC content: 38.91

Gene sequence:

>2547_bases
ATGCCCATAAAGTTCACCGATGAACTTAAGTCAGATGAGCTTTATAATCTATTGTCTCAAGGAGCAGTCGTTATTACTCC
TAACAATAGATTAAGCGGTGCCATCCTTCAGAATTACTTCACTTATTGTTCCAGAAAAACAATTACCAAGCCAATGTGCT
TGCCTTTTAATACATTTCTGGTCAACTCTTTTGAACAAGTCAAATTCCAAAAACCAGACCTGGAACATCCCATACTTTTA
AACTCGTCACAATGCCAACATTTATGGCGAAAACTGATTAAATCCCATCCTTCTATCATTTATACGGAAGGCTTGCTTAA
AACAATAATGCAAGCATGGGAATACTGTGAGCAATGGCAACTTACACCTGAAGCGCCTGCTTTTCACTACACGCCGCAAA
CACAACAATTTCAACAATGGTGGCAATCTTTTAATAAAACACTTAAAGAAATTTCTGCCATCCATCAGCATCAATTAATT
CCCTACTTGCTTGATTCCAATTATCAAGGGCTCGCAAAAACCGTTGTCTGGATGTGCTTTGATGACTTTAATCCACAGCA
ATTATCTCTGCAAAATTATTTGAACGCGCAGGGGGTAATTCAATATGGTTATGATTTAAAAGAAAACCAGGAGACTCCGG
AGGTTTTCTCAGCTAAAGACAAAAAAACAGAATACCAGGAATTGATGACCTGGTTGGAGAAGAAAATTCAACAAGGAAAA
AAGCAAATCGGGGTTGTTGTGCCTAATCTTGAACAAGAATCATCGGTTTTGCAACGAATTTTACGCGACTGCTTTGAACC
CAATTTATTTAATATTTCTTTAGGCAAACCATTAAGCGCATTTCACTTGATCTCTCATGCCCTCATTTGGCTGAGTCTTG
ATCACAATCTCTTAAATAATCATCAAGCGGCTTTACTGCTCCAATCACCCTACCTTGGCAAGGCAAAAGATGAGTTTCTT
CAAAGATCAGATTACTTACAGGAAAGCAAGTTGTTGCAAGACCAATCTTTCCCCACAAAATTATTTATTGAGGACATTGC
CTACCACACGCCTAAACTGGCTGAATTGTTAAAAAACATGAATTTTTATCCGGAAAAAACTACTCTGGATGAATGGATTG
AGTTATTTCAGGAGAGGTTAAATGGCATTGGTTTTCCTGGAGATTATGTTTTGAACTCAGAGGATTATCAATGCTTTAAT
CGCTTTACAATGATTTTTGACGAATTCAGACAATTAAGTCTGATAAGCAGCCATTTGACTAAAACAGAGGCATTTGAAAC
GTTAAAACAACTCATAGACAACACTATTTTTCAACCACAAAAAAGCAATTCACCAATTCAAATTTTGGGATTGTTAGAGG
CATCAGGTTGCGAGTTTGACAGCCTTTGGGTAATGGGATTGACTGATCGATGTTTACCTCAACAAACACGTTTATCGCCC
TTTATCCCATTTGAATTACAGCGTGAACTGGGCATGCCTCACAGTATCCCGGCAAGAGAGCTCCAATATGCCAAGCAAAT
TTTGCAAAGACTGCAACGAGGCAGCATGGAAACCGTTTTTAGTTATCCACAATTTGACGATGACACGCCTAATTTACCCT
GCTCATTGATTATTCATTATCCTGCCTACCTCAGCCGACCTGCTGACAATAAAACAAATGTTCAAAGTTGTTTGGTTCCT
CTTGAAGAAAACTATGAAGTACCTGTAAAACCTGATGAATCAATCTCTGGCGGAACCAGCTTACTAAGCAATCAGGCCAA
ATGCCCTTTTAAAGCATTAGCACAACACCGACTTAAGGCAAACCCTGTTCTAAAAACTACAGATGGAATGGATGACAAGG
AAAAAGGTCAATTAATCCATAAAATCCTGGAGTTGCTCTGGCAAAGATTGGAAAATCAGGAACACTTAATTAAATTAAAA
CCCGCTGAACTTGAACGATTCATTGATCAAGCAATTCAAGGCGCTTTAAATCCGATTAGGCAACGACACTCCCAGGCTTT
TCCTGACTTGGTTGCCAATGTTGAATACATGAGATTAAAACGAATTATCTTGTCTTATCTGGAATGGGAAAAGCAACGCC
CTCCTTTTAAAATCACAGGCCTGGAAGAAAATCATTCGATCAATTTGGCTGGACTCGATTTTAAAGTAAGAGTGGACAGA
CTGGATGAAGTAGGTAATAAGCAATGGGTCATTGATTACAAAAGCACTCTCCCTGGCGGCAAGCCATGGAATGAAGAAAG
ACCGATGGAGCCTCAATTGCTACTTTATGCCTTGCTTAACGAACAAATTAATACTTTGTTATTGATTCAATTAAAAACCG
GAAAAATCAAGCTCAGCGGTTTTAGCGAGGAAAAATGGGATACCAAAGAGATTAATACTTTGAAAGAGGATGAAAGTTGG
GAAGACTATCGACAACGCTGGCTAGAACAATTAACTCATTTAGCTGAAGAAATCAAGTCTGGCTATTGCTCGCCACGCCC
TCAAAATCTGAACATTTGCCAGCGCTGTGATTTTCAGAACTTATGCCGCTTCCAGGCTAAACAATAA

Upstream 100 bases:

>100_bases
ATGTATTTAAGAGGGCAATTAGTATACGATATCCTGCATACTCAAACTCGGCGTCAACAAAAACATAAGCATGCATTGGC
AAAAAGTAAATCAGAAGGAC

Downstream 100 bases:

>100_bases
ACCAGTTTTAATTTATCGGGACTACTTATGCATCATTTAATTCTTGGTTATGGCTATTGCGGTTATTACCTGGCTCAAGA
ACTTCTTGGGCATCATCAAC

Product: RecB family transporter exonuclease

Products: NA

Alternate protein names: DNA Repair Protein; ATP-Dependent Nuclease Subunit B

Number of amino acids: Translated: 848; Mature: 847

Protein sequence:

>848_residues
MPIKFTDELKSDELYNLLSQGAVVITPNNRLSGAILQNYFTYCSRKTITKPMCLPFNTFLVNSFEQVKFQKPDLEHPILL
NSSQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKTLKEISAIHQHQLI
PYLLDSNYQGLAKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLKENQETPEVFSAKDKKTEYQELMTWLEKKIQQGK
KQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFL
QRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFN
RFTMIFDEFRQLSLISSHLTKTEAFETLKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSP
FIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPCSLIIHYPAYLSRPADNKTNVQSCLVP
LEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK
PAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLAGLDFKVRVDR
LDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESW
EDYRQRWLEQLTHLAEEIKSGYCSPRPQNLNICQRCDFQNLCRFQAKQ

Sequences:

>Translated_848_residues
MPIKFTDELKSDELYNLLSQGAVVITPNNRLSGAILQNYFTYCSRKTITKPMCLPFNTFLVNSFEQVKFQKPDLEHPILL
NSSQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKTLKEISAIHQHQLI
PYLLDSNYQGLAKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLKENQETPEVFSAKDKKTEYQELMTWLEKKIQQGK
KQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFL
QRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFN
RFTMIFDEFRQLSLISSHLTKTEAFETLKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSP
FIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPCSLIIHYPAYLSRPADNKTNVQSCLVP
LEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK
PAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLAGLDFKVRVDR
LDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESW
EDYRQRWLEQLTHLAEEIKSGYCSPRPQNLNICQRCDFQNLCRFQAKQ
>Mature_847_residues
PIKFTDELKSDELYNLLSQGAVVITPNNRLSGAILQNYFTYCSRKTITKPMCLPFNTFLVNSFEQVKFQKPDLEHPILLN
SSQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQLTPEAPAFHYTPQTQQFQQWWQSFNKTLKEISAIHQHQLIP
YLLDSNYQGLAKTVVWMCFDDFNPQQLSLQNYLNAQGVIQYGYDLKENQETPEVFSAKDKKTEYQELMTWLEKKIQQGKK
QIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQ
RSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNR
FTMIFDEFRQLSLISSHLTKTEAFETLKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSPF
IPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPCSLIIHYPAYLSRPADNKTNVQSCLVPL
EENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLKP
AELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLAGLDFKVRVDRL
DEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESWE
DYRQRWLEQLTHLAEEIKSGYCSPRPQNLNICQRCDFQNLCRFQAKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98879; Mature: 98748

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIKFTDELKSDELYNLLSQGAVVITPNNRLSGAILQNYFTYCSRKTITKPMCLPFNTFL
CCCCCCCHHCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCCCCHHHHH
VNSFEQVKFQKPDLEHPILLNSSQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQ
HCCHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCC
LTPEAPAFHYTPQTQQFQQWWQSFNKTLKEISAIHQHQLIPYLLDSNYQGLAKTVVWMCF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHH
DDFNPQQLSLQNYLNAQGVIQYGYDLKENQETPEVFSAKDKKTEYQELMTWLEKKIQQGK
CCCCCHHCCHHHHCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
KQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNN
HHCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHEECHHHHCC
HQAALLLQSPYLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNM
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCC
NFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLISSHLT
CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KTEAFETLKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSP
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCHHCCCC
FIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPCSLIIHY
CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEC
PAYLSRPADNKTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKA
HHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCC
NPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLKPAELERFIDQAIQGALNPIR
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
QRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLAGLDFKVRVDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCEEEEEHHH
LDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSG
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEEECC
FSEEKWDTKEINTLKEDESWEDYRQRWLEQLTHLAEEIKSGYCSPRPQNLNICQRCDFQN
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHH
LCRFQAKQ
HHHHCCCC
>Mature Secondary Structure 
PIKFTDELKSDELYNLLSQGAVVITPNNRLSGAILQNYFTYCSRKTITKPMCLPFNTFL
CCCCCCHHCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCCCCHHHHH
VNSFEQVKFQKPDLEHPILLNSSQCQHLWRKLIKSHPSIIYTEGLLKTIMQAWEYCEQWQ
HCCHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCC
LTPEAPAFHYTPQTQQFQQWWQSFNKTLKEISAIHQHQLIPYLLDSNYQGLAKTVVWMCF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHH
DDFNPQQLSLQNYLNAQGVIQYGYDLKENQETPEVFSAKDKKTEYQELMTWLEKKIQQGK
CCCCCHHCCHHHHCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
KQIGVVVPNLEQESSVLQRILRDCFEPNLFNISLGKPLSAFHLISHALIWLSLDHNLLNN
HHCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHEECHHHHCC
HQAALLLQSPYLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNM
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCC
NFYPEKTTLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLISSHLT
CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KTEAFETLKQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSP
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCHHCCCC
FIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPCSLIIHY
CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEC
PAYLSRPADNKTNVQSCLVPLEENYEVPVKPDESISGGTSLLSNQAKCPFKALAQHRLKA
HHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCC
NPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLKPAELERFIDQAIQGALNPIR
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
QRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRPPFKITGLEENHSINLAGLDFKVRVDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCEEEEEHHH
LDEVGNKQWVIDYKSTLPGGKPWNEERPMEPQLLLYALLNEQINTLLLIQLKTGKIKLSG
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEEECC
FSEEKWDTKEINTLKEDESWEDYRQRWLEQLTHLAEEIKSGYCSPRPQNLNICQRCDFQN
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHH
LCRFQAKQ
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA