Click here to switch to the map view.

The map label for this gene is yoaA [H]

Identifier: 148359469

GI number: 148359469

Start: 2234382

End: 2236340

Strand: Reverse

Name: yoaA [H]

Synonym: LPC_1376

Alternate gene names: 148359469

Gene position: 2236340-2234382 (Counterclockwise)

Preceding gene: 148359470

Following gene: 148359468

Centisome position: 62.53

GC content: 40.63

Gene sequence:

>1959_bases
GTGGAAGAAATAACCACTTTCGCTGAAACCTGTCGGCGAACTCTCAGTGAGAGGGGAAGACTATCAACTGCTATTCCAGG
CTTTGTGGCAAGAGCACCACAAGCCGATTTGGCAGTGGCTATAGCCAATGCTATTGTTCAGCGATCGATTTTGGTAGCTG
AGGCAGGAACAGGAACAGGTAAGACCTTTGCTTATTTATTGCCTTGTTTGTTAAGTGGTAAAAAAGCGCTTATCTCAACA
GCAACCAAAACGCTTCAAGATCAACTTTTTCAAAAAGATTTGCCAACCTTGATTAGAGCTTTGGGTTTATCGGTACGGAT
CCAGAATTTAAAGGGGCGTTCCAATTATATTTGTCAATATCGAGTTGAAAAGCATGCTGAGGAAGGACAATTTCAAAGCC
CGCAATGCGCTCACGAAATACTTCATGTCAGAGATAAATTGTCTCAAATGCAAGAAGGCGTTCGCTCGGAATTACCTGAA
ATTAATGAAGACTCCTCAGTATGGCATTATGTCACATCCACTACTGATAACTGTCTTGGTGCAGAATGTCCAAATCATGA
AACCTGTTTTTTAGTGAAAGCGCGTAAGCGAGCGATGGAGGCAGATATTGTCGTTATTAATCACCATCTTTTTTTTGCTG
ATTCTCAGTTAAAAAAAGATGGTTTTAGCGAACTATTACCTGGTGTTGATGTCGTAGTGTTTGATGAAGCTCATCAGCTT
GCAGACATCGCCTCTAATTTCAATGGGGAGCGCCTGGGAACTCGTCAATTCAAAGACTTGGTCGATGATATGCTTAATGA
GTGGCCAATCCTGGATTTAGCTAATCAACCTCTAAAGTCTATAAGTCATAAAGCAGACAAGCTGGTGGATCAATTGCTCA
ATGCTTTGCCGACTCGTGAGGAACGAATCAGTTGGGAGTTGGTTAAACGAAATAAGGAGTTTATGGAGGCGTGGAATACC
TGGTTATCTTTAAAGGATGAGTTGATACAATGCTTGGAATCAAAGGATGCTGCTGATATTCCCGGGTTAAAAAGATGTCA
AGAGCGCCTTTTGGATTTGGAAACTGTCTTGCTTTCTTTCACTGAGGAAAATAATCATAAAATTCGCTGGTTAGAACGTT
TTAAACATACTCTTGTTTTTCATGCCACCCCGTATGATGTTGCTGAATCATTTAGTCAATTATTAAAAGACCAATCATGT
GCCTATATTTTTACATCAGCTACACTGACTATGGCATCGGCTTTTGATAGTTTTTGTAAACCTCTGGGATTGGATAAAGT
ACAAACTTTGTTATTATCCAGCCCATTTGATTATCAGCAACAGGCTCTGCTTTATTTGCCTCGAGGAATACCCGATCCTA
AAGATGCTCATTATTATGAAGCTTTGCTGGAAAAGGCTTTACCAGTTATAGAAGCATGCGGTGGCCGTTGCTTTTTCCTT
TTTACCAGTCATAAAGCAGTAAAACTGGTTGCTCAAATGCTGAGCAATACTTTAAAATATCCGCTTTTGATTCAAGGTGA
TGAGGCAAAACCCATTCTCCTTTCTCGATTCCGGCAATTGGGTAATGCTGTGCTTTTAGGCACTTCTACTTTTTGGGAAG
GTGTTGATGTAAAAGGGGAGGCGCTTTCTTGCGTGATTATAGATAAATTACCCTTTGCTAACCCCGTTGATCCTGTAATT
CGTGGCAGAATGGCTTATTTAAAGAAAAAAGGGCTTTCCGGTTTTGATGAATTATCGTTGCCAAACGCCGTCATTGCATT
AAAACAGGGAGTAGGGCGATTGATTCGTGACATCACCGATAAAGGTATATTAATGATAGGAGATCCACGTTTGACTGGTA
GAGAGTATGGTCGAACCATTTTGGCAAGTTTACCTGGGCTTCCGAAAACTCGGGATGAAGAAAAAGTACTGCATTTTATT
AAAGAGTTGGCTTTAAATGATGAAACTGTTAGCGATTGA

Upstream 100 bases:

>100_bases
TATCCAAAACCTGGCCTAATATTACTGCTAAAAAGGACGCTCCCTCTGATGCCAAGGATTGGGAAGAAGTAAAGGATAAA
CTTCAATATTTGCAAAAAGA

Downstream 100 bases:

>100_bases
TACCTCAACTGAACTGGCCAGTGTTGCCATCCTTATAGGTGACGAAATCATAAGCAGGGAGCAGGATAGTCAAAGAATCC
ATGCCCAATTGATTTTACCT

Product: ATP dependent DNA helicase Rad3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MEEITTFAETCRRTLSERGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALIST
ATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPE
INEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQL
ADIASNFNGERLGTRQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWELVKRNKEFMEAWNT
WLSLKDELIQCLESKDAADIPGLKRCQERLLDLETVLLSFTEENNHKIRWLERFKHTLVFHATPYDVAESFSQLLKDQSC
AYIFTSATLTMASAFDSFCKPLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFL
FTSHKAVKLVAQMLSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPFANPVDPVI
RGRMAYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIGDPRLTGREYGRTILASLPGLPKTRDEEKVLHFI
KELALNDETVSD

Sequences:

>Translated_652_residues
MEEITTFAETCRRTLSERGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALIST
ATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPE
INEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQL
ADIASNFNGERLGTRQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWELVKRNKEFMEAWNT
WLSLKDELIQCLESKDAADIPGLKRCQERLLDLETVLLSFTEENNHKIRWLERFKHTLVFHATPYDVAESFSQLLKDQSC
AYIFTSATLTMASAFDSFCKPLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFL
FTSHKAVKLVAQMLSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPFANPVDPVI
RGRMAYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIGDPRLTGREYGRTILASLPGLPKTRDEEKVLHFI
KELALNDETVSD
>Mature_652_residues
MEEITTFAETCRRTLSERGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALIST
ATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPE
INEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQL
ADIASNFNGERLGTRQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWELVKRNKEFMEAWNT
WLSLKDELIQCLESKDAADIPGLKRCQERLLDLETVLLSFTEENNHKIRWLERFKHTLVFHATPYDVAESFSQLLKDQSC
AYIFTSATLTMASAFDSFCKPLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFL
FTSHKAVKLVAQMLSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLPFANPVDPVI
RGRMAYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIGDPRLTGREYGRTILASLPGLPKTRDEEKVLHFI
KELALNDETVSD

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=634, Percent_Identity=43.217665615142, Blast_Score=487, Evalue=1e-138,
Organism=Escherichia coli, GI1787018, Length=270, Percent_Identity=32.2222222222222, Blast_Score=99, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 73101; Mature: 73101

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEITTFAETCRRTLSERGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
KTFAYLLPCLLSGKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEE
RVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
AECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQL
CCCCCCCEEEEEHHHHHHHHCCEEEEEEEEEECCCHHHHCCHHHHCCCCEEEEECCHHHH
ADIASNFNGERLGTRQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTRE
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH
ERISWELVKRNKEFMEAWNTWLSLKDELIQCLESKDAADIPGLKRCQERLLDLETVLLSF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TEENNHKIRWLERFKHTLVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASAFDSFCK
HCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHC
PLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFL
CCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
FTSHKAVKLVAQMLSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGE
EECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
ALSCVIIDKLPFANPVDPVIRGRMAYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITD
EEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
KGILMIGDPRLTGREYGRTILASLPGLPKTRDEEKVLHFIKELALNDETVSD
CCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEEITTFAETCRRTLSERGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
KTFAYLLPCLLSGKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEE
RVEKHAEEGQFQSPQCAHEILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
AECPNHETCFLVKARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQL
CCCCCCCEEEEEHHHHHHHHCCEEEEEEEEEECCCHHHHCCHHHHCCCCEEEEECCHHHH
ADIASNFNGERLGTRQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTRE
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH
ERISWELVKRNKEFMEAWNTWLSLKDELIQCLESKDAADIPGLKRCQERLLDLETVLLSF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TEENNHKIRWLERFKHTLVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASAFDSFCK
HCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHC
PLGLDKVQTLLLSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFL
CCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
FTSHKAVKLVAQMLSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGE
EECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEECCHHHCCCCCCCC
ALSCVIIDKLPFANPVDPVIRGRMAYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITD
EEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
KGILMIGDPRLTGREYGRTILASLPGLPKTRDEEKVLHFIKELALNDETVSD
CCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]