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The map label for this gene is ygaD [C]

Identifier: 148359349

GI number: 148359349

Start: 2093657

End: 2094151

Strand: Reverse

Name: ygaD [C]

Synonym: LPC_1247

Alternate gene names: 148359349

Gene position: 2094151-2093657 (Counterclockwise)

Preceding gene: 148359350

Following gene: 148359348

Centisome position: 58.55

GC content: 40.81

Gene sequence:

>495_bases
ATGGGTCATTTCTCAATACTGGTTGAAGAAATAGCTGCCTATTTAAAAAAAGCAAAATGGCAATTAGTGACTGCGGAATC
TTGTACAGGAGGTTTAATTGCTGCTTGCCTTACGGAAATACCTGGAAGCTCAAATTGGTTTGAGCGTGGTTTTGTTACTT
ATAGTAATTTAGCTAAAGAGGAAATGCTTGCTGTTGCTCACGAGCTAATACAAACTCATGGGGCAGTCAGTGAAGAAGTG
GCTTTGGCTATGGCTGTTGGTGCGTTACAACATAGTATGGGTAATATCGCTGTATCAGTTACTGGCATCGCAGGTCCAGA
AGGAGGCAGTATTGAAAAACCAGTAGGTACTGTATGCTTTGCCTGGGCAGTTCACCATCAATTTCAACAAACATCAAGAC
AACAATTCACTGGAAGTCGGCAAGAAATACGTTTGTCTGCCTGTCAATATGCTTTAAATGGAGTTCTTTCTACTCTTAAA
AAAGTCTGTGGCTAA

Upstream 100 bases:

>100_bases
TCTACTGAAGGCCAAGGCCAGTAAGATTAATTTCAGTGTTATTTATAAATTATCAAAAAACCCCATAGATGTTTTATGGG
GTTTTTTATAGGTGAAAGGT

Downstream 100 bases:

>100_bases
CCGAATGGTTTTTTAAAAACATAGTTTAATAAAACATCAATAGTCTATATTTTTTCAATTCTATTATTTAGTCTCAAATT
CTTGTTTTTACCATTCAGCT

Product: CinA-like competence damage protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MGHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEV
ALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
KVCG

Sequences:

>Translated_164_residues
MGHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEV
ALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
KVCG
>Mature_163_residues
GHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEVA
LAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLKK
VCG

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=147, Percent_Identity=52.3809523809524, Blast_Score=149, Evalue=7e-38,
Organism=Escherichia coli, GI1787818, Length=144, Percent_Identity=34.7222222222222, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17510; Mature: 17379

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKE
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHH
EMLAVAHELIQTHGAVSEEVALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHH
AWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLKKVCG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKE
CHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHH
EMLAVAHELIQTHGAVSEEVALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHH
AWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLKKVCG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA