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The map label for this gene is fliR [H]

Identifier: 148359331

GI number: 148359331

Start: 2076412

End: 2077182

Strand: Reverse

Name: fliR [H]

Synonym: LPC_1228

Alternate gene names: 148359331

Gene position: 2077182-2076412 (Counterclockwise)

Preceding gene: 148359332

Following gene: 148359330

Centisome position: 58.08

GC content: 38.26

Gene sequence:

>771_bases
ATGAATCTCGATTATCAAACTATGATTCGCTTAATGAGCCAATTTATATGGCCCATGGTGCGTATTGGTGGTTTGATGCT
TACGGTGCCAGTTTTATCTTCAGCACTATTACCGGCACGCATTAAAATTCTCTTTGTTTTTACTTTAAGCTGTGTGTGTT
TTACCTATGTGCCTCATAACTTGTCTTTCGAAAATTTTAATGGCCTTTATCTTGTCTATCTCGTACAGGAATTATTATTG
GGTTTGTTAATGGGATTTGTGTTGCAAATAGTATTTCAAGTATTCATTCTTGGGGGGCAAATTATATCCATGCAGGCGGG
TTTGGGATTTGCGGTAATGGTTGATCCAACCAGCAATGCTAGTGTGCCTTTAATCAGTCAATTGTATTTAATGGTGACCA
CATTAATATTTTTGGCATTGAATGGCCATTTGGCTATTCTTGAAACTCTAATCGAGAGTTTCAGAATAATGCCAATCGGT
AAATCTTCTCTGGATCCATCAGTTGTCTGGAGTACGATTATGTTTTCAGGGTGGATGTTCAAAGAAGCGGTATTGATTTC
AATACCTGCGATTTTATCTTTGCTTATTGTAAGCTTGTCTTTTGGAGTTATGGCTCGGGTTGCTCCGCAATTAAACCTTT
TCTCTTTAGGTTTTCCGATTACGCTATTGATGGGGTTTGTCATCATTAAAATAGGGTTGCCCACTGTCGGGACAGAAATG
GTAGAGAGCATTAAGCATGGAATCCAATTTATAACAGGAATATTGCGCTGA

Upstream 100 bases:

>100_bases
CTTTTTGGTTCTAATTTTAGCAGGACCTTGGTTATTAAAGACATTGATAAATTATACAGATACTTTGATAAGCAATATTC
CTTATTTGATTGGATAAAAA

Downstream 100 bases:

>100_bases
TGGCCGATGAAGAACAATCACAAGAAAAAACGGAACAGCCTTCTTCCAAGCGATTAAAAGAATCACGAAAAAAGGGGCAG
GTTGCACGTTCCAAAGATTT

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENFNGLYLVYLVQELLL
GLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
KSSLDPSVVWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
VESIKHGIQFITGILR

Sequences:

>Translated_256_residues
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENFNGLYLVYLVQELLL
GLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
KSSLDPSVVWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
VESIKHGIQFITGILR
>Mature_256_residues
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHNLSFENFNGLYLVYLVQELLL
GLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNASVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIG
KSSLDPSVVWSTIMFSGWMFKEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
VESIKHGIQFITGILR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=224, Percent_Identity=31.6964285714286, Blast_Score=114, Evalue=9e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28270; Mature: 28270

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSFENFNGLYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCCC
SVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSVVWSTIMFSGWMF
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHH
KEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHH
VESIKHGIQFITGILR
HHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNLDYQTMIRLMSQFIWPMVRIGGLMLTVPVLSSALLPARIKILFVFTLSCVCFTYVPHN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LSFENFNGLYLVYLVQELLLGLLMGFVLQIVFQVFILGGQIISMQAGLGFAVMVDPTSNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCCC
SVPLISQLYLMVTTLIFLALNGHLAILETLIESFRIMPIGKSSLDPSVVWSTIMFSGWMF
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHH
KEAVLISIPAILSLLIVSLSFGVMARVAPQLNLFSLGFPITLLMGFVIIKIGLPTVGTEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHH
VESIKHGIQFITGILR
HHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]