Click here to switch to the map view.

The map label for this gene is traJ [H]

Identifier: 148358326

GI number: 148358326

Start: 203926

End: 204279

Strand: Reverse

Name: traJ [H]

Synonym: LPC_0188

Alternate gene names: 148358326

Gene position: 204279-203926 (Counterclockwise)

Preceding gene: 148358330

Following gene: 148358325

Centisome position: 5.71

GC content: 41.24

Gene sequence:

>354_bases
ATGGTCGAAAAGATAAAAAAACCCATCAGAAAACACGGTCGTCATCTTCGTGTTCCCGTCCTTCCCGATGAAGAAATTGC
CATTAAATCCCATGCCGCCCAGGCAGGACTTTCTGTTGCTGAATATTTGCGTCGGATTGGGTTGGGCTATCAAATCCAAA
GTGCCATTGATAAAGAGTATATTCTTCAGCTATCCAAAATAAATGCAGACATGGGAAGGCTTGGGGGATTGTTTAAGCTC
TGGCTTACCCAAGATAGGCGTGTCGCACATTTTGATTATCGAAAAGTAAAAGCTTTATTAGATCGCATTAAAACAACGCA
GGATGTTATGTTTGAAGTGGTGAGAAAATTATGA

Upstream 100 bases:

>100_bases
CTACGGTGCTCAACGGTATCTTGCTTTTTGAGATCAAAAAGAAAACAATTAATCAGTACCTAAAGGATTGCAAACCACTT
GTTAAGAGGTCAGCATCCTT

Downstream 100 bases:

>100_bases
TTATTCACCATATTCCAATGAAATCAGCGCGACTAAGCAGCTTTTCTGGTCTTGTAAAATATATAACCGATCATCAAAAC
AAGCAGGAACGAGTGGGAAA

Product: conjugal transfer relaxosome component TraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MVEKIKKPIRKHGRHLRVPVLPDEEIAIKSHAAQAGLSVAEYLRRIGLGYQIQSAIDKEYILQLSKINADMGRLGGLFKL
WLTQDRRVAHFDYRKVKALLDRIKTTQDVMFEVVRKL

Sequences:

>Translated_117_residues
MVEKIKKPIRKHGRHLRVPVLPDEEIAIKSHAAQAGLSVAEYLRRIGLGYQIQSAIDKEYILQLSKINADMGRLGGLFKL
WLTQDRRVAHFDYRKVKALLDRIKTTQDVMFEVVRKL
>Mature_117_residues
MVEKIKKPIRKHGRHLRVPVLPDEEIAIKSHAAQAGLSVAEYLRRIGLGYQIQSAIDKEYILQLSKINADMGRLGGLFKL
WLTQDRRVAHFDYRKVKALLDRIKTTQDVMFEVVRKL

Specific function: This protein is essential for positively regulating the expression of transfer genes that are involved in the conjugal transfer of DNA between bacterial cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13550; Mature: 13550

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKIKKPIRKHGRHLRVPVLPDEEIAIKSHAAQAGLSVAEYLRRIGLGYQIQSAIDKEY
CHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH
ILQLSKINADMGRLGGLFKLWLTQDRRVAHFDYRKVKALLDRIKTTQDVMFEVVRKL
HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
>Mature Secondary Structure
MVEKIKKPIRKHGRHLRVPVLPDEEIAIKSHAAQAGLSVAEYLRRIGLGYQIQSAIDKEY
CHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHH
ILQLSKINADMGRLGGLFKLWLTQDRRVAHFDYRKVKALLDRIKTTQDVMFEVVRKL
HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1665997; 9753548; 2538813 [H]