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The map label for this gene is dapB [H]

Identifier: 148358290

GI number: 148358290

Start: 162767

End: 163498

Strand: Reverse

Name: dapB [H]

Synonym: LPC_0152

Alternate gene names: 148358290

Gene position: 163498-162767 (Counterclockwise)

Preceding gene: 148358291

Following gene: 148358288

Centisome position: 4.57

GC content: 40.85

Gene sequence:

>732_bases
ATGCGAACACGTGTCATTGTTAATGGTGCCAATGGAAAAATGGGGATACTAGCCTGTGAAACATTGGAAAACCATGAACA
GTTTGAAGTAGTAGCCAAACTAAGCAGACAGGACAATCTTGGGCAAAGTATACTGGACACCAAAGCACAAATAGTTGTTG
ATTTAACAAGAGCAGACTGTGTCTATGAAAACTCTTTAACCATTATTAATCACGGCGCTCGACCGGTTATTGGAACATCG
GGGTTGGTTGAAACACAAATCGATGAGCTCACCAAACTGTGTGAAATAAAACAAATAGGTGGAATTATTGCACCTAATTT
TTCTCTCGGCGCCATTTTAATGATGATGCTCGCCACGAAAGCTTCTGAATATTTTTCAGAGGTTGAAATCATTGAAGGCC
ATCATCAACAAAAATTGGATGCACCATCAGGGACTGCTTTAAAAACTGCAGAAATGATAGCTGCGGCGCGCAAAAAACCC
AAAAACAAACTTCCATTAAAAGAATTAACCCCTGGGGCCCGAGGCGGCTCTCATCATGATATTAATATTCATTCCCTTAG
ACTGCCTGGATTGCTTGCTCGGCAAGAAGTCCTCTTTGGCAATATAGGCGAGACACTCTCCATTACACATAACAGTATAG
ATCGCCACTGTTTTATGCCGGGAATTGTGCTGGCCTGTCAAAAAGTATTGAATTTAACTAATCTTGTTTATGGTCTGGAA
CATTTGCTTTAA

Upstream 100 bases:

>100_bases
TTAATGAGGGAGTTCAGATAGGCTCAATGACCGAATTAAAATTTTTTTTATAAAGAGATTGGGATTTTTCGTAAATCATG
TAAATAATTCGGAGTGATAA

Downstream 100 bases:

>100_bases
ATTGCAAAATCCAGGTCGACCCGTATTACTATCGGGCATACGGGTCTCCTTTTCGCATTTCACCCCTTGATATGGAACGT
TTCCCAACTCAATTTTTTAA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRTRVIVNGANGKMGILACETLENHEQFEVVAKLSRQDNLGQSILDTKAQIVVDLTRADCVYENSLTIINHGARPVIGTS
GLVETQIDELTKLCEIKQIGGIIAPNFSLGAILMMMLATKASEYFSEVEIIEGHHQQKLDAPSGTALKTAEMIAAARKKP
KNKLPLKELTPGARGGSHHDINIHSLRLPGLLARQEVLFGNIGETLSITHNSIDRHCFMPGIVLACQKVLNLTNLVYGLE
HLL

Sequences:

>Translated_243_residues
MRTRVIVNGANGKMGILACETLENHEQFEVVAKLSRQDNLGQSILDTKAQIVVDLTRADCVYENSLTIINHGARPVIGTS
GLVETQIDELTKLCEIKQIGGIIAPNFSLGAILMMMLATKASEYFSEVEIIEGHHQQKLDAPSGTALKTAEMIAAARKKP
KNKLPLKELTPGARGGSHHDINIHSLRLPGLLARQEVLFGNIGETLSITHNSIDRHCFMPGIVLACQKVLNLTNLVYGLE
HLL
>Mature_243_residues
MRTRVIVNGANGKMGILACETLENHEQFEVVAKLSRQDNLGQSILDTKAQIVVDLTRADCVYENSLTIINHGARPVIGTS
GLVETQIDELTKLCEIKQIGGIIAPNFSLGAILMMMLATKASEYFSEVEIIEGHHQQKLDAPSGTALKTAEMIAAARKKP
KNKLPLKELTPGARGGSHHDINIHSLRLPGLLARQEVLFGNIGETLSITHNSIDRHCFMPGIVLACQKVLNLTNLVYGLE
HLL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=276, Percent_Identity=28.9855072463768, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 26501; Mature: 26501

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRVIVNGANGKMGILACETLENHEQFEVVAKLSRQDNLGQSILDTKAQIVVDLTRADC
CCCEEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCCHHHHHCCHHEEEEEHHHCE
VYENSLTIINHGARPVIGTSGLVETQIDELTKLCEIKQIGGIIAPNFSLGAILMMMLATK
EECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHH
ASEYFSEVEIIEGHHQQKLDAPSGTALKTAEMIAAARKKPKNKLPLKELTPGARGGSHHD
HHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
INIHSLRLPGLLARQEVLFGNIGETLSITHNSIDRHCFMPGIVLACQKVLNLTNLVYGLE
EEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HLL
HHC
>Mature Secondary Structure
MRTRVIVNGANGKMGILACETLENHEQFEVVAKLSRQDNLGQSILDTKAQIVVDLTRADC
CCCEEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCCHHHHHCCHHEEEEEHHHCE
VYENSLTIINHGARPVIGTSGLVETQIDELTKLCEIKQIGGIIAPNFSLGAILMMMLATK
EECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHH
ASEYFSEVEIIEGHHQQKLDAPSGTALKTAEMIAAARKKPKNKLPLKELTPGARGGSHHD
HHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
INIHSLRLPGLLARQEVLFGNIGETLSITHNSIDRHCFMPGIVLACQKVLNLTNLVYGLE
EEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HLL
HHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA