Definition | Orientia tsutsugamushi Boryong, complete genome. |
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Accession | NC_009488 |
Length | 2,127,051 |
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The map label for this gene is rhp4
Identifier: 148284455
GI number: 148284455
Start: 779541
End: 780119
Strand: Direct
Name: rhp4
Synonym: OTBS_0799
Alternate gene names: NA
Gene position: 779541-780119 (Clockwise)
Preceding gene: 148284454
Following gene: 148284460
Centisome position: 36.65
GC content: 30.05
Gene sequence:
>579_bases ATGGTGGTTATGCGAATCAGTGATACTAGTGATTCTATTCAAATCTTACCTAACAGCAATAATTTAGCTGAGCTAACAAA ATTAGTTTACAATTGTATATTTAACCATGGAGGTTATAATATTTTGTTCTTGCTTGGATGGAATAACAGCACATATCGAT GCATTCAAGATAAAATTGTGCAGCTTCGTAATACTGAAACAGAAACAATTAGGGTTATACGTAGTACTCAAGATGATCTT CCTATATCCTTAGAATACTTTTGTGAAGACCAAAGCAAACAAAATGTATTATATACACAAGTAAGTTTTACTTTTAATAC ACTAAGATTAATAGTAGAGAAGTATTATTATGTATCTCTACGGTTCAAACCTTACAAATCTAGCCTAGCTATTGTATACA ATAGTCACAGTGAAAATTTACAGAAACAATTAGATGATTTTTTTACTCAACAATGCATGAATCACAATGAAAGTAGCAAA TGCATCCATCACAGTGAAAGTAGCATTAGTGTTTTAGATATTGATCAATTTAGAGATTTTGTAGGTGATATATTATTAAT TGATGATCCAGAACGATAG
Upstream 100 bases:
>100_bases GCTTGTGTATTAGTTTTTTAATACTTATACAACAAACACAGCTTGATAATTCAGCTAATGTAATTTATAAACCAGGAGTG TAATGCAATTTTAAATATAT
Downstream 100 bases:
>100_bases TATATGTATTTCAAGCAGCAATGCTCCATTTTGCAAATATATAATGCTATGTATGCTAGTTAGAAAAAGTTTGCATTCTA ACTAGCATAAAGCTCACAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MVVMRISDTSDSIQILPNSNNLAELTKLVYNCIFNHGGYNILFLLGWNNSTYRCIQDKIVQLRNTETETIRVIRSTQDDL PISLEYFCEDQSKQNVLYTQVSFTFNTLRLIVEKYYYVSLRFKPYKSSLAIVYNSHSENLQKQLDDFFTQQCMNHNESSK CIHHSESSISVLDIDQFRDFVGDILLIDDPER
Sequences:
>Translated_192_residues MVVMRISDTSDSIQILPNSNNLAELTKLVYNCIFNHGGYNILFLLGWNNSTYRCIQDKIVQLRNTETETIRVIRSTQDDL PISLEYFCEDQSKQNVLYTQVSFTFNTLRLIVEKYYYVSLRFKPYKSSLAIVYNSHSENLQKQLDDFFTQQCMNHNESSK CIHHSESSISVLDIDQFRDFVGDILLIDDPER >Mature_192_residues MVVMRISDTSDSIQILPNSNNLAELTKLVYNCIFNHGGYNILFLLGWNNSTYRCIQDKIVQLRNTETETIRVIRSTQDDL PISLEYFCEDQSKQNVLYTQVSFTFNTLRLIVEKYYYVSLRFKPYKSSLAIVYNSHSENLQKQLDDFFTQQCMNHNESSK CIHHSESSISVLDIDQFRDFVGDILLIDDPER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22475; Mature: 22475
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVMRISDTSDSIQILPNSNNLAELTKLVYNCIFNHGGYNILFLLGWNNSTYRCIQDKIV CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH QLRNTETETIRVIRSTQDDLPISLEYFCEDQSKQNVLYTQVSFTFNTLRLIVEKYYYVSL HHCCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHEEEEEE RFKPYKSSLAIVYNSHSENLQKQLDDFFTQQCMNHNESSKCIHHSESSISVLDIDQFRDF EEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEHHHHHHH VGDILLIDDPER HCCEEEEECCCC >Mature Secondary Structure MVVMRISDTSDSIQILPNSNNLAELTKLVYNCIFNHGGYNILFLLGWNNSTYRCIQDKIV CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH QLRNTETETIRVIRSTQDDLPISLEYFCEDQSKQNVLYTQVSFTFNTLRLIVEKYYYVSL HHCCCCHHHEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHEEEEEE RFKPYKSSLAIVYNSHSENLQKQLDDFFTQQCMNHNESSKCIHHSESSISVLDIDQFRDF EEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEHHHHHHH VGDILLIDDPER HCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA