| Definition | Staphylococcus aureus subsp. aureus JH9, complete genome. |
|---|---|
| Accession | NC_009487 |
| Length | 2,906,700 |
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The map label for this gene is hsdR [H]
Identifier: 148268925
GI number: 148268925
Start: 2653060
End: 2655921
Strand: Reverse
Name: hsdR [H]
Synonym: SaurJH9_2515
Alternate gene names: 148268925
Gene position: 2655921-2653060 (Counterclockwise)
Preceding gene: 148268926
Following gene: 148268924
Centisome position: 91.37
GC content: 27.78
Gene sequence:
>2862_bases ATGAGTAGATTACTAAATGATTTCAATCAATCTTTAAAAAAAGGTTTTATAGACAAAGATATTTCTCATAAAGGGAATTA TACACCGAAGCTTTTAGTAAATAATAAAAATGAAAAAGTCCTTTCAACAATTATAGATGAACTTCAAAAATGTGAAACGT TCTATTTTTCTGTAGCTTTTATAACAGAAAGCGGATTAGCCAGCTTAAAGGCTCAACTATTAGATTTAAGCAATAAGGGT GTTAAAGGGAAAATATTAACATCTAATTACTTAGGATTTAATAGTCCTAAAATGTATGGAGAATTACTTAAATTAAAAAA TGTAGAGGTAAGATTAACTGATATTGCTGGATTCCATGCCAAAGGATATATTTTTGAACATAAGGATTATAGTTCTATGG TAATAGGAAGCTCTAATTTAACATCTAATGCGTTAAAGGTTAATTATGAGCATAATGTTTTACTGTCTACTATGAAAAAT GGTGATTTAGTTGATAGTGTAAAAAATGAATTTGAATTGTTATGGCAAAAGAGTACCCCACTGACTGAGCAATGGATTAA TTCATATAAAGAATCATTTGAGTACCGTTCCTTAGAAAAATTAGCGGAGGTTGAACAAACTCAAATGCTGCTAGCTGATA AGGTGAAAAAATCAGTGGAAATTGTACCCAATTTAATGCAAGCAGAAGCATTAAGGTCATTAAAAGCTATTAGGGATAAA ACCAAAGATAAGGCGTTAATAATATCTGCAACTGGTACAGGTAAAACGATTTTATGTGCATTAGATGTTAGAGAAGTAAA CCCTAATAAATTTTTATTTATTGTTCATAATGAGGGGATTTTAAATAGAGCTAAGGAAGAATTTAAAAAAGTATTACCTA TAAAAAATGATAGTGATTTTGGATTGTTGACAGGAAAACATAGAGATGTCGATGCCAAATATTTATTTGCAACCATTCAA ACATTATCTAGAGATGATAATTTTAAGCAATTTGATGAAAATGAATTTGATTATATTGTTTTTGATGAAGCACATCGTTC TGCTGCATCTACTTATCAACGAGTATTTAACTACTTCAAACCTAAGTTCATGCTGGGAATGACTGCTACACCAGAAAGAT CAGATGAATTAAGTATATTTGAACTGTTTGATTATAATATTGCATATGAAATAAGGTTACAAGCAGCGTTAGAAAGTGAT ATTTTATGTCCATTTCATTATTTTGGTGTGACTGATTATGTACATCAAGGTATTAAAGAAGATGATGTAACTAAACTGAG ATATTTAACTTCTGATGAAAGAGTTAATTATATTATTCAAAAGACAGATTACTATGGATATTCAGGTGAAATTTTACAAG GATTAATTTTTGTGAGTAGCAAAAAAGAAGCTTATGATTTAGCGGATAAACTAAGTTCAAAAGGGATTAAAAGTGTTGCT TTAACAGGAGATGATAGTGTTAATTATCGCCAAATTGTAATAGAAAAATTAAAAGAAGGTAAGATTAACTATATTATAAC TGTAGATCTTTTTAACGAAGGTATTGATATTCCAGAAGTCAATCAAGTTGTAATGTTGAGACCAACAGAGTCTAGTATTA TATTCATTCAGCAACTTGGTAGAGGATTAAGAAAAAGTGCAAATAAAGAGTATGTTACTGTAATTGATTTTATTGGTAAT TATAAGACCAATTATTTAATTCCGATTGCGCTTTCTGGGGATCAATCGCAAAATAAAGATAATTATAAGAAGTTTTTAAC GAATAACGATTCGATTAATGGAGTATCTACAATTAATTTTGAAGAAGTTGCTAAAAAACAGATTTACAATTCATTGGATG CAGTATCATTGAATCAAAATAAATTAATATTAAAAGCTTATGAAGAAGTTGAAAATAGATTGGGACACATGCCGTTACTA ATGGATTTTATACAACAACATTCTATAGATCCAAGCGTTATATTTTCTAAATTTAGTAATTATTACGAATTTTTATTAAG GTATAAAAAAATAGATGCTTTATTGACGGAAAATGAATCTAAAAATCTGGTTTTCTTTTCAAGACAAATAGCACCTGGAT TGAAAAGAATCGATAGTTTAGTTTTAGAAGAACTTTTAAAAAATGAATTAACATATGATGAATTAAAAAATAAAATGTTG AACGAAGTTAAGGATATAACAGAAGATGATATAGATACTTCATTAAGAATTTTAGATTTTTCATTTTACAACGCAGGAAT TGAAAAAATCTATGGAAGTCCCATTATAGAATGTAATGAAAGAATGATAAGACTAAGCGATGCATTTACTAATGCTCTAA GTAATCAAACATTTAAAATATTTTTAGAAGATCTTATTGAATTATCAAAGTATAACAATGAAAAATACCAAAAAGGTAAA AATGGACTGATTTTATATAATAAATATTCAAGAGAAGATTTTAGCAAAATATTTAATTGGAATAAAAATGGTTCGTCTGT AATCATGGGATACATGATAAGAAGCCAAGAAATGCCAATATTTATCACTTATGATAAGCATGAGGATATAAGTGATAGTA CAAAATATGAAGATGAATTTTTAAGTCAAGATGAATTAAAATGGTTTACTAAATCTAATAGAACGCTAAAATCAAAAGAA GTTCAGAAAATTTTGTCCCATAGAGCAAAAGGAATTAAAATGTATATTTTTGTACAGAAAAAAGATGATGATGGTATATA TTTTTATTATTTAGGAACTGCTGGATATATAGAAGGTTCAGAGAAGCAAGATAAAATGCCGAATGGTTCAAACGTAGTAA CGATGGATTTAGCACTCGATAAAGCTGTAAGAGATGATATATATCGCTATATAACAAATTAA
Upstream 100 bases:
>100_bases CATAAGAGTATTGAATGGTTGTCAATAAACGAACTTGATAAATTAAATTGGGCCCCAGCGGATATACCAGCCGTTAATAA AATTATGACTGAGGGATAAT
Downstream 100 bases:
>100_bases TGTAAACCGAAAAATGAATGTTAGTAAAGATGTATTTAAACATCAATTGTAATAAGTAAAGACATTGAAGTTTCAGTGTT ATTATTTTAAATATAAGCGC
Product: type III restriction enzyme, res subunit
Products: NA
Alternate protein names: R.EcoEI [H]
Number of amino acids: Translated: 953; Mature: 952
Protein sequence:
>953_residues MSRLLNDFNQSLKKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAFITESGLASLKAQLLDLSNKG VKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKN GDLVDSVKNEFELLWQKSTPLTEQWINSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDK TKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAKYLFATIQ TLSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESD ILCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVA LTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRKSANKEYVTVIDFIGN YKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLL MDFIQQHSIDPSVIFSKFSNYYEFLLRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKML NEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKIFLEDLIELSKYNNEKYQKGK NGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKE VQKILSHRAKGIKMYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN
Sequences:
>Translated_953_residues MSRLLNDFNQSLKKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAFITESGLASLKAQLLDLSNKG VKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKN GDLVDSVKNEFELLWQKSTPLTEQWINSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDK TKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAKYLFATIQ TLSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESD ILCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVA LTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRKSANKEYVTVIDFIGN YKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLL MDFIQQHSIDPSVIFSKFSNYYEFLLRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKML NEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKIFLEDLIELSKYNNEKYQKGK NGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKE VQKILSHRAKGIKMYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN >Mature_952_residues SRLLNDFNQSLKKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAFITESGLASLKAQLLDLSNKGV KGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKNG DLVDSVKNEFELLWQKSTPLTEQWINSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDKT KDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAKYLFATIQT LSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESDI LCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVAL TGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRKSANKEYVTVIDFIGNY KTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLM DFIQQHSIDPSVIFSKFSNYYEFLLRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKMLN EVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKIFLEDLIELSKYNNEKYQKGKN GLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKEV QKILSHRAKGIKMYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN
Specific function: The EcoEI enzyme recognizes 5'-GAGN(7)ATGC-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788511, Length=377, Percent_Identity=22.8116710875332, Blast_Score=97, Evalue=4e-21, Organism=Saccharomyces cerevisiae, GI6320539, Length=421, Percent_Identity=26.1282660332542, Blast_Score=127, Evalue=8e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 109881; Mature: 109749
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLLNDFNQSLKKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAF CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEEEEE ITESGLASLKAQLLDLSNKGVKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHA EECCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCC KGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKNGDLVDSVKNEFELLWQKSTP CCEEEECCCCCEEEEECCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCC LTEQWINSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDF CCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCC GLLTGKHRDVDAKYLFATIQTLSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFK EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCC PKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESDILCPFHYFGVTDYVHQGIKE CEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEHHCCCCCCCHHHHCHHHHHHCCCCC DDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVA CCCHHHHEECCCCCEEEEEEECCCCCCCHHHHHEEHEECCCCHHHHHHHHHHCCCCCEEE LTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLG EECCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHH RGLRKSANKEYVTVIDFIGNYKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINF HHHHHCCCCCEEEEEEHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCH EEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLMDFIQQHSIDPSVIFSKFSN HHHHHHHHHCCCCCEECCCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH YYEFLLRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKML HHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKI HHHHHCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCEECCHHHEEHHHHHHHHHCCCHHHH FLEDLIELSKYNNEKYQKGKNGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPI HHHHHHHHHHCCCHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCE FITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKEVQKILSHRAKGIKMYIFVQK EEEECCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE KDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN ECCCCEEEEEECCCEECCCCCHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure SRLLNDFNQSLKKGFIDKDISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAF CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEEEEE ITESGLASLKAQLLDLSNKGVKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHA EECCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCC KGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKNGDLVDSVKNEFELLWQKSTP CCEEEECCCCCEEEEECCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCC LTEQWINSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPIKNDSDF CCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCC GLLTGKHRDVDAKYLFATIQTLSRDDNFKQFDENEFDYIVFDEAHRSAASTYQRVFNYFK EEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCC PKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESDILCPFHYFGVTDYVHQGIKE CEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEHHCCCCCCCHHHHCHHHHHHCCCCC DDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVA CCCHHHHEECCCCCEEEEEEECCCCCCCHHHHHEEHEECCCCHHHHHHHHHHCCCCCEEE LTGDDSVNYRQIVIEKLKEGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLG EECCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHH RGLRKSANKEYVTVIDFIGNYKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINF HHHHHCCCCCEEEEEEHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCH EEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLMDFIQQHSIDPSVIFSKFSN HHHHHHHHHCCCCCEECCCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH YYEFLLRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSLVLEELLKNELTYDELKNKML HHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKI HHHHHCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCEECCHHHEEHHHHHHHHHCCCHHHH FLEDLIELSKYNNEKYQKGKNGLILYNKYSREDFSKIFNWNKNGSSVIMGYMIRSQEMPI HHHHHHHHHHCCCHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCE FITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKEVQKILSHRAKGIKMYIFVQK EEEECCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE KDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN ECCCCEEEEEECCCEECCCCCHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]