Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 148268747

GI number: 148268747

Start: 2465742

End: 2466698

Strand: Reverse

Name: lytR [H]

Synonym: SaurJH9_2334

Alternate gene names: 148268747

Gene position: 2466698-2465742 (Counterclockwise)

Preceding gene: 148268748

Following gene: 148268746

Centisome position: 84.86

GC content: 35.53

Gene sequence:

>957_bases
GTGGTGGGATTGAAACGTTCGTCTAAAAGTAAAATGAGCCTACCGAAAAAAATATTTTTATGGGTATTCGGTATTTTAGT
AATCTTAGCGATTGTAGCTGTTGTGTATGTAGCTGCTAAAATTTTTATTACTGGTAATAAGATACACAATCCGTTAGATC
GCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTTATTTGGTGTCGAT
TCAGATGCTGATCGTAAGAAAAAGGGTGGCGGAGAGCGTAGTGATAGTATTATGATTTTATCTATCAACCCTAAAACGAA
GAAAACTGAAATAGTAAGTATACCGCGTGATACAAGAGCGGAAATTGTTGGCCGTGGTACTACTGAAAAAATTGCACATG
CCTATGCATATGGTGGACCAAATATGGCTGTTAAATCACTTGAAAAATTAATGAATGTGCCAATTGATCATTATGCGACA
ATCGATATGGATGGTTTGCATAATATGATAGATAGCATCGGCGGTGTTGATGTAGTAAGTAATGATACATTCACTGTTGA
TGGTGTTCGTTTTACAAAAGGACAGCAGACACATGTAAATGGTGATCAAGCATTGAAGTTTATTAGAAGTCGTAAAGAAG
AAGGTGCTGGTGGTGACTTTGGTCGACAACAACGTCAGCAAATTGTGCTTGAAGCGATGGCCAATAAGATTGCAAGCCCA
TCATCGATTACACATTTTAATAGTCTAATGAATGAAATTCAAAATAATGTTAAAACAGATTTAACATTAGGTGATTTGAA
TACGATTAGAAGCAATTATAAAGATGCTAATGACACGATTAATAAACATCAATTGAGTGGTCAAGGCGGCATTCAAAGTG
ACGGATTGTACTACTTCATTCCTAGTGAGCAGTCAAAAGCTGAAAGTACTAAGTTATTAAAAGATAATCTAGAGTAG

Upstream 100 bases:

>100_bases
ATAAAAAATAGTTATACGTCTACAGAAGTATAGTAAAAAAATTATTTTACTATATAATAAATAGAGAAAACAGACAAAGT
ATGTAAGGAATAGTAAAGGA

Downstream 100 bases:

>100_bases
TAAACTAAGGGAAAATAAGTTATCAAAATTGTACACAAATTAATTAGATAGAATGATCTGTAAATAGAATAACGAATAGA
ACTAATAGCCCGTAAATAGA

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MVGLKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVD
SDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYAT
IDMDGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASP
SSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Sequences:

>Translated_318_residues
MVGLKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVD
SDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYAT
IDMDGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASP
SSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE
>Mature_318_residues
MVGLKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRDKKVSLNDGDPFTIALFGVD
SDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAEIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYAT
IDMDGLHNMIDSIGGVDVVSNDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASP
SSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIPSEQSKAESTKLLKDNLE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 35007; Mature: 35007

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGLKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELR
CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCCHHHHH
DKKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRA
HCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHH
EIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVS
HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEC
NDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASP
CCEEEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
SSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFI
CHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHCCCCHHCCHHHCCCCCCCCCCCCEEEEE
PSEQSKAESTKLLKDNLE
CCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVGLKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELR
CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCCCCHHHHH
DKKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRA
HCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHH
EIVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVS
HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEC
NDTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASP
CCEEEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
SSITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFI
CHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHCCCCHHCCHHHCCCCCCCCCCCCEEEEE
PSEQSKAESTKLLKDNLE
CCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA