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The map label for this gene is deoC1 [H]

Identifier: 148268588

GI number: 148268588

Start: 2295373

End: 2296035

Strand: Reverse

Name: deoC1 [H]

Synonym: SaurJH9_2173

Alternate gene names: 148268588

Gene position: 2296035-2295373 (Counterclockwise)

Preceding gene: 148268590

Following gene: 148268587

Centisome position: 78.99

GC content: 40.72

Gene sequence:

>663_bases
ATGAATAGTGCAAAATTGATTGATCACACTTTATTGAAGCCTGAGTCAACACGTACGCAAATCGATCAAATCATCGATGA
AGCGAAAGCATACCATTTTAAATCTGTATGTGTGAATCCAACGCATGTTAAATATGCAGCAGAGCGACTAGCTGATTCAG
AGGTGTTAGTTTGTACGGTAATAGGATTCCCATTAGGTGCATCGACAACTGCGACGAAAGCATTTGAAACAGAAGATGCG
ATTCAAAATGGTGCAGATGAAATTGACATGGTCATCAACATCGGCGCATTAAAAGATGGACGTTTTGATGATGTACAACA
AGACATTGAAGCAGTGGTGAAAGCTGCGAAAGGTCACACAGTAAAAGTGATTATTGAGACGGTATTGTTGGACCATGACG
AAATCGTAAAAGCGAGTGAATTAACAAAAGTGGCTGGTGCGGACTTCGTTAAAACTTCAACAGGTTTTGCAGGTGGCGGT
GCGACTGCAGAAGACGTTAAATTAATGAAAGATACAGTAGGTGCTGATGTAGAAGTAAAAGCATCAGGTGGCGTACGTAA
TTTAGAAGATTTCAATAAAATGGTTGAAGCAGGTGCGACACGTATTGGTGCGAGCGCAGGCGTTCAAATTATGCAAGGTT
TAGAAGCAGATTCAGATTACTAA

Upstream 100 bases:

>100_bases
TAAAAAGCGAACATCTAACCTGATATTTAAATGAACCTGACGCTCAATCAACTAATTTACAACCGTATTTTTATAATCAA
CCATAAAGGAGGAGATAGAA

Downstream 100 bases:

>100_bases
TTTTATAAAAATATGTAAGCATGGGACATCGTAACCATATATAAGTATGTCGATATCAGCTTTAAGACATCATAAATGCC
ATGATGATTCTAAGATAATT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 1; DERA 1; Deoxyriboaldolase 1 [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY

Sequences:

>Translated_220_residues
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
>Mature_220_residues
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=218, Percent_Identity=28.8990825688073, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1790841, Length=210, Percent_Identity=34.7619047619048, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17533015, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23342; Mature: 23342

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEE
IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
VKVIIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEE
IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
VKVIIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA