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The map label for this gene is yfhQ [H]

Identifier: 148268340

GI number: 148268340

Start: 2056092

End: 2057129

Strand: Reverse

Name: yfhQ [H]

Synonym: SaurJH9_1922

Alternate gene names: 148268340

Gene position: 2057129-2056092 (Counterclockwise)

Preceding gene: 148268342

Following gene: 148268339

Centisome position: 70.77

GC content: 34.01

Gene sequence:

>1038_bases
ATGTATCAGCAGTCTAGTTTTAAAGAAAATTTGATACACTGGTTTGATGAAAATCAAAGAGAAATGCCATGGCGACAAAC
GACCAATCCGTACTATATTTGGTTAAGTGAGGTCATGTTACAACAGACACAAGTTAAAACAGTTATTGACTATTATCATC
GTTTTGTTGAACGATTTCCAACTGTGGAAGTTTTGAGTCAAGCTTCGGAAGATGAAGTGTTAAAGTATTGGGAAGGCTTA
GGATATTATAGTAGAGCTCGAAATTTTCATACGGCGATTAAAGAAGTTTATGATAAATATGAAGGCTTAGTTCCCAAAGA
TCCTGATCAATTTAAAGCGTTAAAAGGTGTTGGCCCATACACACAAGCTGCAGTAATGAGCATTGCATATAATGTACCAC
TAGCAACTGTAGACGGAAATGTTTTTCGAGTATGGTCTAGATTGAATGATGACTATCGAGATATTAAATTACAATCGACG
AGGAAATCGTACGAACAAGAATTGTTACCGTATGTTACTACAGAAGCTGGAACGTTTAATCAAGCTATGATGGAATTAGG
GGCATTAATTTGTACACCAAAAAATCCATTATGCTTATTTTGTCCAGTTCAAGAAAACTGTGAGGCATTTGATAAAGGTA
CATTTGAAAAGTTACCTGTTAAATCTAAAAATGTAAGTAAAAAAGTAATTGAGCAATCCGTCTTTTTAATTAGAAATAAT
CAAGGTCAATATCTGTTGCAAAAGCGTAGCGAAAAATTATTGCATGGTATGTGGCAATTTCCTATGTTTGAAAGTGAGCA
TGCTAGACGTAAAATGACTGAAAAAATCGGTCATGACATTCAACCAGTAGAAACACCTATTTTTGAGTTGAAGCATCAAT
TTACTCATTTAACATGGAAGATTAAAGTATACGCCGCTTCAGGAGCAATTAACATTGAAACATTACCAGATGACATGATT
TGGTTTAATTTAAGTGATCGAGACCAATATACATTCCCTGTACCTATGTCAAAGATTTATCAATTTATAAATGGGTAA

Upstream 100 bases:

>100_bases
CAAATAACTAAATTAACTTACATACTAACCATGATTTTAATGTACAATAAAAACATTATGAGTAAAGACAATTAATTTTG
GTGAGGAAAGGGTTTTATAA

Downstream 100 bases:

>100_bases
CATTCGATGATTGGTAATATTATCGGAAAACATAGTGACATTAATTTTAAAAATGTATAAATGATATCTTTAAATCTCAT
AGGATAACAATGTCAAAAAG

Product: A/G-specific adenine glycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGL
GYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQST
RKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNN
QGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAASGAINIETLPDDMI
WFNLSDRDQYTFPVPMSKIYQFING

Sequences:

>Translated_345_residues
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGL
GYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQST
RKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNN
QGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAASGAINIETLPDDMI
WFNLSDRDQYTFPVPMSKIYQFING
>Mature_345_residues
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGL
GYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQST
RKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNN
QGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAASGAINIETLPDDMI
WFNLSDRDQYTFPVPMSKIYQFING

Specific function: Involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine, 8- oxo-dGTP) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with almost equal effici

COG id: COG1194

COG function: function code L; A/G-specific DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HhH domain [H]

Homologues:

Organism=Homo sapiens, GI190358497, Length=413, Percent_Identity=28.8135593220339, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI115298648, Length=413, Percent_Identity=28.8135593220339, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI6912520, Length=413, Percent_Identity=28.8135593220339, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI115298650, Length=413, Percent_Identity=28.8135593220339, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI115298654, Length=413, Percent_Identity=28.8135593220339, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI115298652, Length=413, Percent_Identity=28.8135593220339, Blast_Score=184, Evalue=1e-46,
Organism=Escherichia coli, GI1789331, Length=352, Percent_Identity=34.0909090909091, Blast_Score=195, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR023170
- InterPro:   IPR005760
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: 3.2.2.-

Molecular weight: Translated: 40621; Mature: 40621

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00764 ENDONUCLEASE_III_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFP
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
TVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPY
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH
TQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFN
HHHHHHHHHHCCCEEEECCHHHHHHHHHCCCHHHEEEHHHHHHHHHHHCCCEECCCCCHH
QAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNN
HHHHHHHHEEECCCCCEEEECCCHHCHHHHCCCCCHHCCCCCCCHHHHHHHHHHEEEECC
QGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWK
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEE
IKVYAASGAINIETLPDDMIWFNLSDRDQYTFPVPMSKIYQFING
EEEEEECCEEEEEECCCCEEEEEECCCCCEECCCCHHHHHHHHCC
>Mature Secondary Structure
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFP
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
TVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPY
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH
TQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFN
HHHHHHHHHHCCCEEEECCHHHHHHHHHCCCHHHEEEHHHHHHHHHHHCCCEECCCCCHH
QAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNN
HHHHHHHHEEECCCCCEEEECCCHHCHHHHCCCCCHHCCCCCCCHHHHHHHHHHEEEECC
QGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWK
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEE
IKVYAASGAINIETLPDDMIWFNLSDRDQYTFPVPMSKIYQFING
EEEEEECCEEEEEECCCCEEEEEECCCCCEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S Cluster [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Glycosylases; Hydrolysing N-glycosyl compounds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]