Click here to switch to the map view.

The map label for this gene is yhaM [H]

Identifier: 148268313

GI number: 148268313

Start: 2016047

End: 2016988

Strand: Reverse

Name: yhaM [H]

Synonym: SaurJH9_1895

Alternate gene names: 148268313

Gene position: 2016988-2016047 (Counterclockwise)

Preceding gene: 148268314

Following gene: 148268308

Centisome position: 69.39

GC content: 33.65

Gene sequence:

>942_bases
ATGAGAAATATAGAGAATCTAAATCCCGGAGATTCAGTTGATCACTTTTTCTTAGTGCATAAAGCTACACAGGGTGTAAC
AGCACAAGGTAAAGATTATATGACATTACATTTGCAAGATAAAAGTGGTGAAATTGAAGCGAAATTTTGGACGGCTACAA
AAAATGATATGGCAACAATCAAGCCTGAAGAAATTGTACATGTTAAAGGTGACATCATAAACTATCGCGGAAATAAACAG
ATGAAAGTCAACCAAATTAGACTAGCGACAACTGAAGATCAATTAAAAACAGAACAATTTGTAGATGGTGCACCTTTATC
ACCGGCAGAAATACAAGAAGAGATTTCTCATTATTTGCTAGATATTGAAAATGCTAATTTACAACGTATCACACGTCATT
TATTGAAAAAATATCAAGAACGATTTTACACATATCCAGCTGCTAGTTCTCATCATCATAACTTTGCGAGTGGCTTAAGC
TATCATGTATTGACGATGTTACGTATTGCAAAATCAATTTGTGACATTTATCCATTGTTAAACAAAAGTTTGTTATATAG
TGGTATTATTTTGCATGATATTGGTAAAGTTAGAGAATTGAGTGGTCCTGTTGCGACGTCGTATACAGTCGAAGGTAACT
TATTAGGACACATCTCGATTGCGAGTGATGAAGTAGTTGAAGCAGCTCGTGAATTGAACATTGAAGGAGAAGAAATCATG
TTGTTAAGACATATGATTTTATCTCATCATGGTAAGTTAGAGTATGGTTCGCCAAAACTGCCATACTTAAAAGAAGCAGA
AATTTTATGCTATATCGATAACATCGATGCTAGAATGAATATGTTTGAAAAGGCTTATAAAAAAACTGACAAGGGTCAGT
TTACAGATAAAATATTTGGTCTTGAAAATCGTAGATTCTACAATCCTGAATCACTCGATTAA

Upstream 100 bases:

>100_bases
CAGAACACTATCAAGTACTATACTTTACATGTGTAAAAGATAATATTGTTCCATCAAAAGAAGTGATTACATTAAACAAA
ATAGAGGAAGGCGGGAAACG

Downstream 100 bases:

>100_bases
GAATTAAAAGATATCGGACAGATGAGTATACTGAAACATGAGCTCCTCTGTCCGATTTTTAATGCGAAAAAACCGAGCGG
CCGTGGTATGATTTTTGAAC

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATIKPEEIVHVKGDIINYRGNKQ
MKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLLDIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLS
YHVLTMLRIAKSICDIYPLLNKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFGLENRRFYNPESLD

Sequences:

>Translated_313_residues
MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATIKPEEIVHVKGDIINYRGNKQ
MKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLLDIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLS
YHVLTMLRIAKSICDIYPLLNKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFGLENRRFYNPESLD
>Mature_313_residues
MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATIKPEEIVHVKGDIINYRGNKQ
MKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLLDIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLS
YHVLTMLRIAKSICDIYPLLNKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFGLENRRFYNPESLD

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35779; Mature: 35779

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEE
KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
CHHHEEEEECCEEEECCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHE
DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
ECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHHHHCCCCCHHHH
LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHC
LENRRFYNPESLD
CCCCCCCCCCCCC
>Mature Secondary Structure
MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEE
KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
CHHHEEEEECCEEEECCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHE
DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
ECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHHHHCCCCCHHHH
LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHC
LENRRFYNPESLD
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]