Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 148268086

GI number: 148268086

Start: 1761323

End: 1762075

Strand: Reverse

Name: ybgL [C]

Synonym: SaurJH9_1662

Alternate gene names: 148268086

Gene position: 1762075-1761323 (Counterclockwise)

Preceding gene: 148268087

Following gene: 148268085

Centisome position: 60.62

GC content: 34.93

Gene sequence:

>753_bases
ATGCGAGTTGATTTGAATTGTGATTTAGGCGAAGCATTTGGAAATTATTCCTTTGGTGGTGATCATCAAATTATTCCGTT
AATTACAAGTGCGAATGTTGCTTGTGGTTTTCACGCTGGTGATGAAAATGTAATGAATGAAACGGTAAAACTTGCCAAAG
CACATAATGTTGCAGTAGGTGCACATCCTGGTTTACCTGATTTGAAAGGCTTTGGCAGACGAAATATAGATATCTCTAAC
GACGAGATTTATAATTTGATGATTTATCAATTAGGTGCATTACAAGGGTTTTGTCGCATTCATCAACTTAAAATTAATCA
TGTTAAACCGCATGGTGCATTGTATCAGATGGGTGCAAAAGACAGAGAAATAGCAAACGTTATAGCACAAGCTGTTTATG
ACTTTGATCCATCACTAGTGTTAGTAGGATTAGCAAATTCATATCTAATTTCAGAAGCAAAGAATGTCGGATTAATTACA
GCTTCTGAAGTGTTTGCTGATAGACGATACGAAGATGATGGGCAGCTCGTTAGTAGAAAAGAAAGTGATGCTGTGATTAC
TGATACTGACGAAGCACTTAAGCAGGTTTTAAAGATGGTGAAGGAAAATAAAGTTATTTCAAAAAACAATAAGGAAGTAA
CGTTACAAGCAGATACAATTTGTGTGCATGGTGATGGAGAACATGCATTATTATTTGTTTCGAAAATTAGAGAAATTTTA
ATGAAAGAAGGCATTGATATTCAATCCTTATAG

Upstream 100 bases:

>100_bases
ATGCAGTTTTAAATTATCCACTATATCGTGATGGAGATGCAAAAGATGTTGATATTAAATTTTTAGAAAAACATCAAATT
GTTAAAGGGGTGGAATTATA

Downstream 100 bases:

>100_bases
GGGGCTAAAAAAATGGGGAGAAATTTAAAGCTTAAAAAAGAAAGTGACTTTGAATTCACAAAAAATCATAAAAGGTTATT
ATTAGGTTCTGTATTTTTGA

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENVMNETVKLAKAHNVAVGAHPGLPDLKGFGRRNIDISN
DEIYNLMIYQLGALQGFCRIHQLKINHVKPHGALYQMGAKDREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLIT
ASEVFADRRYEDDGQLVSRKESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQADTICVHGDGEHALLFVSKIREIL
MKEGIDIQSL

Sequences:

>Translated_250_residues
MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENVMNETVKLAKAHNVAVGAHPGLPDLKGFGRRNIDISN
DEIYNLMIYQLGALQGFCRIHQLKINHVKPHGALYQMGAKDREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLIT
ASEVFADRRYEDDGQLVSRKESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQADTICVHGDGEHALLFVSKIREIL
MKEGIDIQSL
>Mature_250_residues
MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENVMNETVKLAKAHNVAVGAHPGLPDLKGFGRRNIDISN
DEIYNLMIYQLGALQGFCRIHQLKINHVKPHGALYQMGAKDREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLIT
ASEVFADRRYEDDGQLVSRKESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQADTICVHGDGEHALLFVSKIREIL
MKEGIDIQSL

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=245, Percent_Identity=45.7142857142857, Blast_Score=235, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1433_STAAN (P67623)

Other databases:

- EMBL:   BA000018
- PIR:   D89942
- RefSeq:   NP_374718.1
- ProteinModelPortal:   P67623
- SMR:   P67623
- STRING:   P67623
- EnsemblBacteria:   EBSTAT00000002467
- GeneID:   1124275
- GenomeReviews:   BA000018_GR
- KEGG:   sau:SA1433
- eggNOG:   COG1540
- GeneTree:   EBGT00050000024589
- HOGENOM:   HBG482818
- OMA:   QTICLHG
- ProtClustDB:   PRK05406
- BioCyc:   SAUR158879:SA1433-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 27463; Mature: 27463

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENVMNETVKLAKAHNVAVG
CEEECCCCHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCEEEE
AHPGLPDLKGFGRRNIDISNDEIYNLMIYQLGALQGFCRIHQLKINHVKPHGALYQMGAK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEECCCC
DREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLITASEVFADRRYEDDGQLVSRK
HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCEEEHHHHHHCCCCCCCCCEECCC
ESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQADTICVHGDGEHALLFVSKIREIL
CCCEEEECCHHHHHHHHHHHHCCCEECCCCCEEEEEEEEEEEECCCCEEEHHHHHHHHHH
MKEGIDIQSL
HHCCCCCCCC
>Mature Secondary Structure
MRVDLNCDLGEAFGNYSFGGDHQIIPLITSANVACGFHAGDENVMNETVKLAKAHNVAVG
CEEECCCCHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHCCEEEE
AHPGLPDLKGFGRRNIDISNDEIYNLMIYQLGALQGFCRIHQLKINHVKPHGALYQMGAK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEECCCC
DREIANVIAQAVYDFDPSLVLVGLANSYLISEAKNVGLITASEVFADRRYEDDGQLVSRK
HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCEEEHHHHHHCCCCCCCCCEECCC
ESDAVITDTDEALKQVLKMVKENKVISKNNKEVTLQADTICVHGDGEHALLFVSKIREIL
CCCEEEECCHHHHHHHHHHHHCCCEECCCCCEEEEEEEEEEEECCCCEEEHHHHHHHHHH
MKEGIDIQSL
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146